Added unit slides, assignments, and dhis2 link

FETP_book/Resources.ipynb

@@ -0,0 +1,290 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "tags": [],
+    "user_expressions": []
+   },
+   "source": [
+    "# All Resources"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "---"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### DHIS2 Training Instance"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "[Click to open in your browser](https://training.dhis.hisp.org/sl-idsr/dhis-web-commons/security/login.action#/N8FEDHfsG5C)\n"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Username and Password will be provided"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "---"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Unit 2.1 Resources"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "> Unit 2.2 Sierra Leone eIDSR and HIS Strategies - resources\n",
+    "\n",
+    "The following resources describe the current eIDSR and HIS context, strategies, and policies:\n",
+    "- Technical Guidelines for IDSR, Section 11\n",
+    "- [Situational Analysis of HIS in Sierra Leone, Sierra Leone Health Information System Policy, December 2021](<https://drive.google.com/drive/folders/12T1JB4VBgr-L_e8W5uJ7LKefmvOx3y7I>)\n",
+    "- [Community Health Information System (CHIS), National CHW Policy 2021](<https://drive.google.com/drive/folders/12T1JB4VBgr-L_e8W5uJ7LKefmvOx3y7I>)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "> Unit 2.1 Dataset"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "[2021 Case Notification Data](https://docs.google.com/spreadsheets/d/14zUEHtDbOYY4OR3vkznVY44meF69vmJQjzHQxAgKlCQ/export?format=xlsx)\n"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "> Unit 2.1 Excel How-To Scribes"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "What are Excel How-To Scribes?\n",
+    "- These are easy to follow, step by step instructions with screenshots.\n"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "- [Make a Working Copy of Your Dataset](https://scribehow.com/shared/Create_a_copy_of_the_dataset_as_a_new_file__C7nao6DfR2OgFA63HVto9Q?referrer=workspace)\n",
+    "- [Create a Copy of a Dataset in a New Worksheet](https://scribehow.com/shared/A_guide_to_making_a_copy_of_MS_Excel_worksheet__nFPW3BrmQ5qA3yMZmBIKug?referrer=workspace)\n",
+    "- [Sort Data Using a Single Variable](https://scribehow.com/shared/A_guide_to_sorting_data_in_MS_Excel__OdSOUuArSBSRInz4qO6ijw?referrer=workspace)\n",
+    "- [Sort Data Using Multiple Variables](https://scribehow.com/shared/A_guide_to_multiple_sorting_in_MS_Excel__NieApI7sQLSM7fcqvGqpjA?referrer=workspace)\n",
+    "- [Filter Data](https://scribehow.com/shared/A_guide_to_filtering_data_in_MS_Excel__tz_S8tOWTiaIyII1Qu1Wng?referrer=workspace)\n",
+    "- [Use the Count Function in Excel](https://scribehow.com/shared/How_big_is_your_dataset_A_guide_to_counting_rows_in_Excel__U6cLWaK9RvSmt6mz3k99Lw?referrer=workspace)\n",
+    "- [Use the Max-Min Function](https://scribehow.com/shared/A_guide_to_estimating_maximum_and_minimum_values_in_Excel_using_MAX_and_MIN_functions__lZiWahgvQJyEbnk45t6MJw?referrer=workspace)\n"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "---"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Unit 2.2 Resources"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "- DHIS2 Data Dictionary (data elements, options, and option sets for measles)\n",
+    "- [2021 Measles Case Notification Data](https://docs.google.com/spreadsheets/d/1GOkEOm9uBZjzWb-J7dmRUjV56spjl4w9VlUm0KipD3Q/export?format=xlsx)\n",
+    "- [2021 Clinical Data (Measles)](https://docs.google.com/spreadsheets/d/1-Q40JmnWks_bjArYycTe_unGkGlQPqJqEtJ7dVnC59I/export?format=xlsx)\n",
+    "- Excel"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "> Unit 2.2 Excel How-To Scribes"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "- [Make a Working Copy of Your Dataset](https://scribehow.com/shared/Create_a_copy_of_the_dataset_as_a_new_file__C7nao6DfR2OgFA63HVto9Q?referrer=workspace)\n",
+    "- [Create a Copy of a Dataset in a New Worksheet](https://scribehow.com/shared/A_guide_to_making_a_copy_of_MS_Excel_worksheet__nFPW3BrmQ5qA3yMZmBIKug?referrer=workspace)\n",
+    "- [Sort Data Using a Single Variable](https://scribehow.com/shared/A_guide_to_sorting_data_in_MS_Excel__OdSOUuArSBSRInz4qO6ijw?referrer=workspace)\n",
+    "- [Sort Data Using Multiple Variables](https://scribehow.com/shared/A_guide_to_multiple_sorting_in_MS_Excel__NieApI7sQLSM7fcqvGqpjA?referrer=workspace)\n",
+    "- [Filter Data](https://scribehow.com/shared/A_guide_to_filtering_data_in_MS_Excel__tz_S8tOWTiaIyII1Qu1Wng?referrer=workspace)\n",
+    "- [Use the Count Function in Excel](https://scribehow.com/shared/How_big_is_your_dataset_A_guide_to_counting_rows_in_Excel__U6cLWaK9RvSmt6mz3k99Lw?referrer=workspace)\n",
+    "- [Use the Max-Min Function](https://scribehow.com/shared/A_guide_to_estimating_maximum_and_minimum_values_in_Excel_using_MAX_and_MIN_functions__lZiWahgvQJyEbnk45t6MJw?referrer=workspace)\n",
+    "- [Using Conditional Formatting to Check for Duplicate Columns](https://scribehow.com/shared/A_guide_on_checking_for_duplicate_columns_in_datasets_using_Conditional_Formatting_function_in_Excel__ISYKaGlzQMa6wx5wUvDdmA?referrer=documents)\n",
+    "- [Applying rules to variables using \"Data Validation\"](https://scribehow.com/shared/A_guide_to_applying_rules_to_variables_using_Data_Validation_in_MS_Excel__6oHRLHy4TbWJd5enKCx_Ng)\n",
+    "- [Identifying missing data using Excel’s “Find and Replace” feature](https://scribehow.com/shared/A_guide_to_identifying_missing_data_in_MS_Excel_using_find_and_replace_function__VB7SGJTMSeiWPU90H69xww)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "---"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Unit 2.3 Resources"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "> Unit 2.3 Excel How-To Scribes"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "- [How to Create a New Variable in MS Excel](https://scribehow.com/shared/A_guide_to_creating_numerical_categories_using_IF_and_ISBLANK_functions_in_MS_Excel__ZlERWSTtRfqwtyiZxSYFAg?referrer=workspace)\n",
+    "- [How to use an Excel Pivot Table to calculate the percentage of reported cases occurring within a given age group for the entire country](https://scribehow.com/shared/A_guide_to_calculating_number_of_cases_and_percentages_of_cases_using_Pivot_Table_in_Excel__-scoU1OvQfec0zdEWBiuPA?referrer=workspace)\n",
+    "- [How to use an Excel Pivot Table to calculate the percentage of reported cases occurring within a given age group for one district](https://scribehow.com/shared/A_guide_to_estimating_the_number_and_percentage_of_cases_by_age_group_and_district_using_filtering_in_Pivot_Table_in_MS_Excel__P83fn0haSFK9SBEekxIsGQ?referrer=workspace)\n",
+    "- [How to create an epi curve in MS Excel (Part 1)](https://scribehow.com/shared/A_guide_to_creating_Epidemic_Curve_with_one_day_interval_using_COUNTIF_and_CHART_functions_in_MS_Excel__Step_1__cB2y9yq_Shi-YcBj7sCFog?referrer=workspace)\n",
+    "- [How to create an epi curve in MS Excel (Part 2)](https://scribehow.com/shared/A_guide_to_creating_Epidemic_Curve_with_one_day_interval_using_COUNTIF_and_CHART_functions_in_MS_Excel__Step_2__cHkXVNylSU2L7g15NldC6w?referrer=workspace)\n",
+    "- [Presentation Template: Surveillance Summary Report](https://docs.google.com/presentation/d/1ahfhP06P9CJGFai81_wVuBU7QjUUj05QrprESgEEu9g/edit#slide=id.g30d90e4d11d_0_73)\n"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "---"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Unit 3 Resources"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "- [Situational analysis of HIS in Sierra Leone, Sierra Leone Health Information System Policy, December 2021](<https://drive.google.com/drive/folders/12T1JB4VBgr-L_e8W5uJ7LKefmvOx3y7I>)\n",
+    "- [Community Health Information System (CHIS), National CHW Policy 2021](<https://drive.google.com/drive/folders/12T1JB4VBgr-L_e8W5uJ7LKefmvOx3y7I>)\n",
+    "- Technical Guidelines for IDSR, Section 11\n",
+    "- DHIS2 Data Dictionary (data elements, options, and option sets for measles)\n",
+    "- [DHIS2 Overview](<https://dhis2.org/overview/>), [Data Quality](<https://docs.dhis2.org/en/use/user-guides/dhis-core-version-241/collecting-data/data-quality.html>), [Configuration](<https://docs.dhis2.org/en/use/user-guides/dhis-core-version-241/configuring-the-system/metadata.html>)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "---"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Unit 4 Resources"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "- Technical Guidelines for IDSR, Section 11\n",
+    "- DHIS2 \n",
+    "    - Global Good Guidebook entry\n",
+    "    - Digital Public Good Registry entry\n",
+    "    - Data Dictionary (data elements, options, and option sets for measles)\n",
+    "    - [DHIS2 Overview](<https://dhis2.org/overview/>), [Data Quality](<https://docs.dhis2.org/en/use/user-guides/dhis-core-version-241/collecting-data/data-quality.html>), [Configuration](<https://docs.dhis2.org/en/use/user-guides/dhis-core-version-241/configuring-the-system/metadata.html>) \n",
+    "    - [DHIS2 Tracker](<https://dhis2.org/tracker/>) and [Android Capture App](<https://dhis2.org/android/>)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "---"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Unit 5 Resources"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "https://www.oregon.gov/oha/HPA/OHIT-HITOC/Documents/HealthInformationExchangeOverview.pdf\n",
+    "\n",
+    "https://africacdc.org/download/african-union-health-information-exchange-guidelines-and-standards/"
+   ]
+  }
+ ],
+ "metadata": {
+  "finalized": {
+   "timestamp": 1617199748724,
+   "trusted": true
+  },
+  "kernelspec": {
+   "display_name": "FETP_venv",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.4"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}

FETP_book/Unit_4.ipynb

@@ -28,6 +28,24 @@
     "- Use selected software applications for re-using and capturing investigation data "
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "#### Unit Slides"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "<iframe class=\"slides\" width=\"800px\" height=\"480px\"\n",
+    "        src=\"https://docs.google.com/presentation/d/1jn_YoActt6_bwVbtPUJrwzGkvVo28R5XQ7kRJVJsfq0/embed?start=false&loop=false&delayms=3000\" frameborder=\"0\" width=\"100%\" height=\"500\" allowfullscreen=\"true\" mozallowfullscreen=\"true\" webkitallowfullscreen=\"true\"></iframe>\n",
+    "\n",
+    "\n",
+    "        "
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},

FETP_book/Unit_5.ipynb

@@ -29,6 +29,24 @@
     "- Use standards and software features to clean, prepare, and merge or join data from multiple sources\n"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "#### Unit Slides"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "<iframe class=\"slides\" width=\"800px\" height=\"480px\"\n",
+    "        src=\"https://docs.google.com/presentation/d/1w_CKwJoi_9QMtMeSYf9Tkm2nFit54plcfTalYe3Xo3M/embed?start=false&loop=false&delayms=3000\" frameborder=\"0\" width=\"100%\" height=\"500\" allowfullscreen=\"true\" mozallowfullscreen=\"true\" webkitallowfullscreen=\"true\"></iframe>\n",
+    "\n",
+    "\n",
+    "        "
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},

FETP_book/Unit_5_Assignment_1.ipynb

@@ -0,0 +1,58 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Assignment 1"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "In your small group, spend the next 10 minutes:"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "- Use the map created in Unit 2 Case Study Assignment #1 \n",
+    "- Identify where and how surveillance and investigation data is stored\n"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "> Be prepared to share your group’s responses"
+   ]
+  }
+ ],
+ "metadata": {
+  "finalized": {
+   "timestamp": 1617199748724,
+   "trusted": true
+  },
+  "kernelspec": {
+   "display_name": "FETP_venv",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.4"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}