Merge pull request #51 from U-Shift/47-responses

closes #47 responses closes #48
U-Shift · May 9, 2024 · 1b9de77 · 1b9de77
2 parents 420f328 + 3b23316
commit 1b9de77
Show file tree

Hide file tree

Showing 37 changed files with 5,687 additions and 78 deletions.
diff --git a/.gitignore b/.gitignore
@@ -59,4 +59,6 @@ rosa-todo.txt
 biclarwww/
 test.Rmd
 LisboaAML_COPERNICUS_clip.tif
-paper/PaperCEUS/subm/
+paper/PaperCEUS/subm/
+paper/PaperCEUS/rev1/
+data-raw/IMOB_viagens_bicle_utilitarias.xlsx
diff --git a/code/test-code/heat-prep_car.R b/code/test-code/heat-prep_car.R
@@ -321,7 +321,7 @@ CAR_TP_TRANSF_lts3 = routes_r5r_100jit_car_TP_lts3_ONLYTPsegment %>% mutate(LTS
   mutate(Car_4 = Car - Bike_new4,
          Car_10 = Car - Bike_new10,
          TP_4 = TP + Bike_new4,
-         TP_10 = TP + Bike_new10,) %>%
+         TP_10 = TP + Bike_new10,) %>%  # THIS IS NOT CORRECT FOR CASES WHEN CAR = 0
   left_join(routes_r5r_100jit_car %>% select(id, segment_duration, distance)) %>% 
   rename(duration_car_total = segment_duration,
          distance_car_total = distance) %>% 
@@ -352,7 +352,7 @@ CAR_TP_TRANSF_lts4 = routes_r5r_100jit_car_TP_lts4_ONLYTPsegment %>% mutate(LTS
   mutate(Car_4 = Car - Bike_new4,
          Car_10 = Car - Bike_new10,
          TP_4 = TP + Bike_new4,
-         TP_10 = TP + Bike_new10,) %>%
+         TP_10 = TP + Bike_new10,) %>% # THIS IS NOT CORRECT FOR CASES WHEN CAR = 0
   left_join(routes_r5r_100jit_car %>% select(id, segment_duration, distance)) %>% 
   rename(duration_car_total = segment_duration,
          distance_car_total = distance) %>% 

diff --git a/paper/PaperCEUS/PaperCEUS_diff1.bbl b/paper/PaperCEUS/PaperCEUS_diff1.bbl
diff --git a/paper/PaperCEUS/PaperCEUS_diff1.log b/paper/PaperCEUS/PaperCEUS_diff1.log
diff --git a/paper/PaperCEUS/PaperCEUS_diff1.pdf b/paper/PaperCEUS/PaperCEUS_diff1.pdf
diff --git a/paper/PaperCEUS/PaperCEUS_diff1.spl b/paper/PaperCEUS/PaperCEUS_diff1.spl
@@ -0,0 +1 @@
+\g@addto@macro\@biboptions{,authoryear}
diff --git a/paper/PaperCEUS/PaperCEUS_diff1.tex b/paper/PaperCEUS/PaperCEUS_diff1.tex
diff --git a/paper/PaperCEUS/PaperCEUS_prerev.Rmd b/paper/PaperCEUS/PaperCEUS_prerev.Rmd
diff --git a/paper/PaperCEUS/PaperCEUS_prerev.tex b/paper/PaperCEUS/PaperCEUS_prerev.tex
diff --git a/paper/PaperCEUS/PaperCEUS_rev1.Rmd b/paper/PaperCEUS/PaperCEUS_rev1.Rmd
diff --git a/paper/PaperCEUS/PaperCEUS_rev1.pdf b/paper/PaperCEUS/PaperCEUS_rev1.pdf
diff --git a/paper/PaperCEUS/PaperCEUS_rev1.spl b/paper/PaperCEUS/PaperCEUS_rev1.spl
@@ -0,0 +1 @@
+\g@addto@macro\@biboptions{,authoryear}
diff --git a/paper/PaperCEUS/PaperCEUS_rev1.tex b/paper/PaperCEUS/PaperCEUS_rev1.tex
diff --git a/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/lma-1.pdf b/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/lma-1.pdf
diff --git a/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/lma-2.pdf b/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/lma-2.pdf
diff --git a/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/map1-1.pdf b/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/map1-1.pdf
diff --git a/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/mapzones-1.pdf b/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/mapzones-1.pdf
diff --git a/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/mapzones-2.pdf b/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/mapzones-2.pdf
diff --git a/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/mododist-1.pdf b/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/mododist-1.pdf
diff --git a/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/mododist-2.pdf b/paper/PaperCEUS/PaperCEUS_rev1_files/figure-latex/mododist-2.pdf
diff --git a/paper/PaperCEUS/PaperCEUS_rev1_word.Rmd b/paper/PaperCEUS/PaperCEUS_rev1_word.Rmd
diff --git a/paper/PaperCEUS/PaperCEUS_rev1_word.pdf b/paper/PaperCEUS/PaperCEUS_rev1_word.pdf
diff --git a/paper/PaperCEUS/PaperCEUS_revcoments.docx b/paper/PaperCEUS/PaperCEUS_revcoments.docx
diff --git a/paper/PaperCEUS/bibliography.bib b/paper/PaperCEUS/bibliography.bib
@@ -78,6 +78,16 @@ @techreport{EuropeanCommission2014
 }
 
 
+@techreport{INEcensus,
+  title={{Censos 2021- XVI Recenseamento Geral da População. VI Recenseamento Geral da Habitação}}, 
+  url={https://censos.ine.pt/xurl/pub/65586079}, 
+  author= {INE},
+  institution = {{Instituto National de Estatística}},
+  address={Lisboa},
+  isbn={978-989-25-0619-7},
+  year={2022}
+} 
+
 @techreport{IMOB,
   title={Mobilidade e funcionalidade do território nas {Áreas Metropolitanas do Porto e de Lisboa}: 2017}, 
   url={https://www.ine.pt/xportal/xmain?xpid=INE&xpgid=ine_publicacoes&PUBLICACOESpub_boui=349495406&PUBLICACOESmodo=2&xlang=pt}, 
@@ -88,7 +98,6 @@ @techreport{IMOB
   year={2018}
 } 
 
-
 @article{HEAT,
   title={Health economic assessment tool ({HEAT}) for walking and for cycling: Methods and user guide on physical activity, air pollution, injuries and carbon impact assessments},
   author={Kahlmeier, Sonja and G{\"o}tschi, Thomas and Cavill, Nick and Castro Fernandez, Alberto and Brand, Christian and Rojas Rueda, David and Woodcock, James and Kelly, Paul and Lieb, Christoph and Oja, Pekka and others},
@@ -181,8 +190,6 @@ @article{lovelace2017
 	volume = {10},
 	number = {1},
 	doi = {10.5198/jtlu.2016.862},
-	url = {https://doi.org/10.5198/jtlu.2016.862},
-	note = {Citation Key: lovelace{\_}propensity{\_}2017},
 	langid = {en}
 }
 
@@ -195,9 +202,7 @@ @article{goodman2019
 	journal = {Journal of Transport \& Health},
 	pages = {263--278},
 	volume = {12},
-	doi = {10.1016/j.jth.2019.01.008},
-	url = {http://www.sciencedirect.com/science/article/pii/S2214140518301257},
-	note = {Citation Key: goodman{\_}scenarios{\_}2019}
+	doi = {10.1016/j.jth.2019.01.008}
 }
 
 @article{felix2017,
@@ -272,20 +277,15 @@ @article{lapaix_role_2021
   publisher = {{Taylor \& Francis}},
   issn = {1556-8318},
   doi = {10.1080/15568318.2020.1765223},
-  urldate = {2023-11-28},
-  abstract = {This paper examines the impact of the perception of bicycle infrastructure on the choice of the bicycle as a feeder mode to access train stations in the Netherlands. The latent factors act in addition to traditional travel time and cost variables, describing the quality of cycling infrastructure at and around railway stations. The analysis is based on a large scale revealed and stated preference survey in the wider metropolitan area of The Hague and Rotterdam (n = 1524). Hybrid choice models for access feeder mode choice were estimated, where the attitude toward cycling to affected the users' perception of the cycling infrastructure, which in turn affected the utility of cycling. The results show that both the quality of cycling infrastructure and latent factors, describing the perceived quality of cycling infrastructure, station connectivity and the general attitude toward cycling, have a significant impact on cycling to the station. The effect of the travel time and cost characteristics on access mode choice significantly changes depending on the perception of the quality of the infrastructure, as well as the attitude toward cycling and frequency of train use. Bicycle parking cost and distance to the platform is the most critical observed factor influencing bicycle access choice to the train stations.},
-  keywords = {Attitudes,cycling,cycling infrastructure,feeder modes,perceptions,train stations},
-  annotation = {10 citations (Crossref) [2023-11-28]},
-  file = {/home/robin/Zotero/storage/PT43RXS4/La Paix et al. - 2021 - Role of perception of bicycle infrastructure on th.pdf}
+  urldate = {2023-11-28}
 }
 @techreport{internationaltransportforum_integrating_2017,
   title = {Integrating {{Urban Public Transport Systems}} and {{Cycling}}},
   author = {{International Transport Forum}},
   year = {2017},
   address = {{Paris}},
   institution = {{Organisation for Economic Co-operation and Development}},
-  urldate = {2023-11-28},
-  file = {/home/robin/Zotero/storage/4FDWM84M/integrating-urban-public-transport-systems-cycling-roundtable-summary_0.pdf}
+  urldate = {2023-11-28}
 }
 @article{vanmil_insights_2021,
   title = {Insights into Factors Affecting the Combined Bicycle-Transit Mode},
@@ -297,13 +297,7 @@ @article{vanmil_insights_2021
   number = {3},
   pages = {649--673},
   issn = {1613-7159},
-  doi = {10.1007/s12469-020-00240-2},
-  urldate = {2023-11-28},
-  abstract = {This paper considers an increasingly popular, sustainable multimodality: the combination of bicycle and transit. The flexibility of the bicycle combined with the speed and comfort of good transit can be a highly competitive alternative to the car. This study shows that many factors influence the uptake and attractiveness of the bicycle-transit combination. An in-depth literature review resulted in over thirty unique factors: six transit-related factors, twenty-first-last mile factors and fifteen context-related factors. All these factors might influence the demand for this `new' mode positively or negatively. An exploratory choice modelling study showed the weights of some factors that Dutch bicycle-train users consider when choosing to cycle to a railway station. The weights showed that people are especially willing to cycle to a station with longer bicycle time (or bicycle parking time) when by doing so they can avoid a transfer in their train trip thereafter. The willingness to pay found were {\texteuro}0.11 for 1~min less bicycle time, {\texteuro}0.08 for a minute less train time, {\texteuro}0.11 for a minute of less time to park and {\texteuro}0.60 per avoided transfer. These kinds of insights give the bicycle and transit sector valuable information to be used in modelling multimodality and cost{\textendash}benefit analyses, thereby supporting improved decision making and integrated design of bicycle and transit networks.},
-  langid = {english},
-  keywords = {Behaviour,Cycling,Transit},
-  annotation = {12 citations (Crossref) [2023-11-28]},
-  file = {/home/robin/Zotero/storage/IYMB9TRL/van Mil et al. - 2021 - Insights into factors affecting the combined bicyc.pdf}
+  doi = {10.1007/s12469-020-00240-2}
 }
 
 @misc{LisboaENova,
@@ -313,4 +307,74 @@ @misc{LisboaENova
 author={{Lisboa E-Nova}},
 year={2023},
 urldate={2023-09-15}
-} 
+} 
+
+
+@masterthesis{Leferink2017,
+  title={Why Cycle To The Railway Station?: A station scanner based on factors that influence bicycle-rail use. With a study on stakeholders in Scotland},
+  author={Tessa Leferink},
+  year={2017},
+  school={Delft University of Technology},
+  type={MSc Thesis in Transport, Infrastructure & Logistics},
+    url={https://resolver.tudelft.nl/uuid:7653ce93-3a2a-4a1f-b804-0b1c4c206eb1}
+}
+
+
+@article{jonkeren2021bicycle,
+  title={The bicycle-train travellers in the Netherlands: personal profiles and travel choices},
+  author={Jonkeren, Olaf and Kager, Roland and Harms, Lucas and Te Br{\"o}mmelstroet, Marco},
+  journal={Transportation},
+  volume={48},
+  pages={455--476},
+  year={2021},
+  publisher={Springer},
+  doi={10.1007/s11116-019-10061-3}
+}
+
+
+@article{larsen2010beyond,
+  title={Beyond the quarter mile: Re-examining travel distances by active transportation},
+  author={Larsen, Jacob and El-Geneidy, Ahmed and Yasmin, Farhana},
+  journal={Canadian Journal of Urban Research: Canadian Planning and Policy},
+  volume={19},
+  number={1},
+  pages={70--88},
+  year={2010},
+  publisher={JSTOR}
+}
+
+@inproceedings{DDfunction2023,
+  title={A Preliminary Effort to Develop a Framework of Distance Decay Functions for New Urban Active Mobility},
+  author={D’Apuzzo, Mauro and Cappelli, Giuseppe and Nardoianni, Sofia and Nicolosi, Vittorio and Evangelisti, Azzurra},
+  booktitle={International Conference on Computational Science and Its Applications},
+  pages={194--208},
+  year={2023},
+  organization={Springer},
+  doi={10.1007/978-3-031-37123-3_16}
+}
+
+@article{krizek2007detailed,
+  title={A detailed analysis of how an urban trail system affects cyclists’ travel},
+  author={Krizek, Kevin J and El-Geneidy, Ahmed and Thompson, Kristin},
+  journal={Transportation},
+  volume={34},
+  pages={611--624},
+  year={2007},
+  publisher={Springer},
+  doi={10.1007/s11116-007-9130-z}
+}
+
+@book{MATSim,
+ address = {London},
+ doi = {10.5334/baw},
+ editor = {Horni, Andreas and Nagel, Kai and Axhausen, Kay},
+ isbn = {978-1-909188-75-4, 978-1-909188-76-1, 978-1-909188-77-8, 978-1-909188-78-5},
+ keyword = {Large-scale simulation, Agent-based modeling, Choice modeling, Transport modeling, Transport planning},
+ month = {Aug},
+ pages = {618},
+ publisher = {Ubiquity Press},
+ title = {Multi-Agent Transport Simulation MATSim},
+ year = {2016}
+}
+
+
diff --git a/paper/PaperCEUS/img/jitter_cairo.pdf b/paper/PaperCEUS/img/jitter_cairo.pdf
diff --git a/paper/PaperCEUS/img/jitter_cairo.png b/paper/PaperCEUS/img/jitter_cairo.png
diff --git a/paper/PaperCEUS/img/jitter_new.png b/paper/PaperCEUS/img/jitter_new.png
diff --git a/paper/PaperCEUS/img/jitter_rev.png b/paper/PaperCEUS/img/jitter_rev.png
diff --git a/paper/PaperCEUS/img/jitter_rev.xcf b/paper/PaperCEUS/img/jitter_rev.xcf
diff --git a/paper/PaperCEUS/img/jitter_rev2.png b/paper/PaperCEUS/img/jitter_rev2.png
diff --git a/paper/PaperCEUS/load/CAR_TP_TRANSF.Rds b/paper/PaperCEUS/load/CAR_TP_TRANSF.Rds
diff --git a/paper/PaperCEUS/load/FREGUESIASgeo_zones.Rds b/paper/PaperCEUS/load/FREGUESIASgeo_zones.Rds
diff --git a/paper/PaperCEUS/load/MUNICIPIOS_dtcc.Rds b/paper/PaperCEUS/load/MUNICIPIOS_dtcc.Rds
diff --git a/paper/PaperCEUS/load/MUNICIPIOSgeo.Rds b/paper/PaperCEUS/load/MUNICIPIOSgeo.Rds
diff --git a/paper/PaperCEUS/load/MUNICIPIOSgeo_mapa.Rds b/paper/PaperCEUS/load/MUNICIPIOSgeo_mapa.Rds
diff --git a/paper/PaperCEUS/load/POPMunicipios.Rds b/paper/PaperCEUS/load/POPMunicipios.Rds
diff --git a/paper/PaperCEUS/load/TRIPSall_mun.Rds b/paper/PaperCEUS/load/TRIPSall_mun.Rds