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| name: Check Ontology Release & Trigger Build-Deploy | ||
| on: | ||
| workflow_call: | ||
| inputs: | ||
| ontology: | ||
| description: 'The ontology to use.' | ||
| required: true | ||
| type: string | ||
| international: | ||
| description: 'Is the ontology babelon international?' | ||
| default: false | ||
| type: boolean | ||
| load: | ||
| description: 'Should load the data?' | ||
| default: true | ||
| type: boolean | ||
| jobs: | ||
| watcher: | ||
| runs-on: ubuntu-latest | ||
| outputs: | ||
| sha: ${{ steps.sha.outputs.value }} | ||
| deploy: ${{ steps.compare.outputs.value }} | ||
| steps:g | ||
| - name: Authenticate to Google Cloud | ||
| uses: 'google-github-actions/auth@v1' | ||
| with: | ||
| credentials_json: '${{ secrets.GCLOUD_SA_KEY }}' | ||
| - name: Setup Google Cloud CLI | ||
| uses: 'google-github-actions/setup-gcloud@v1' | ||
| - name: Get ontology config | ||
| run: | | ||
| wget https://raw.githubusercontent.com/TheJacksonLaboratory/ontology-service/main/config/ontologies.json | ||
| - name: Get json by ontology | ||
| uses: sergeysova/jq-action@v2 | ||
| id: target | ||
| with: | ||
| cmd: "jq -r '.[] | select(.prefix==\"${{ inputs.ontology }}\")' ontologies.json > target.json" | ||
| - name: Get latest tag_name | ||
| uses: sergeysova/jq-action@v2 | ||
| id: purl | ||
| with: | ||
| cmd: "jq -r '.[] | select(.prefix==\"${{ inputs.ontology}}\").base_file' target.json" | ||
| - name: Get latest SHA | ||
| uses: sergeysova/jq-action@v2 | ||
| id: sha | ||
| with: | ||
| cmd: "curl \"${{ steps.purl.outputs.value }}\" | shasum | cut -c -7" | ||
| - name: Get existing SHA for service | ||
| id: existing | ||
| run: | | ||
| EXISTING=$(gcloud container images list-tags us-docker.pkg.dev/jax-cs-registry/docker/ontology/ontology-service-${{ inputs.ontology }} --limit 1 2>/dev/null | tail -n 1 | awk '{print $2}' | tr ',' '\n' | grep -v "latest" | grep -v "\." || echo "") | ||
| echo "value=$EXISTING" >> $GITHUB_OUTPUT | ||
| - name: Compare and configure | ||
| id: compare | ||
| run: | | ||
| echo "value=${{steps.sha.outputs.value != steps.existing.outputs.value }}" >> "$GITHUB_OUTPUT" | ||
| echo "${{steps.sha.outputs.value != steps.existing.outputs.value }}" | ||
| - name: Get international config | ||
| uses: sergeysova/jq-action@v2 | ||
| id: international | ||
| with: | ||
| cmd: "jq -r '.international'' target.json" | ||
| - name: Check values | ||
| run: | ||
| echo "${{steps.international.outputs.value}}" | ||
| echo "${{steps.purl.outputs.value}}" | ||
| # trigger_deploy: | ||
| # needs: watcher | ||
| # if: needs.watcher.outputs.deploy == 'true' | ||
| # uses: TheJacksonLaboratory/ontology-service/.github/workflows/ontology-build-deploy.yml@main | ||
| # with: | ||
| # ontology: ${{ inputs.ontology }} | ||
| # international: ${{ inputs.international }} | ||
| # load: ${{ inputs.load }} | ||
| # tag: "${{needs.watcher.outputs.sha}}" | ||
| # secrets: inherit | ||
