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@Teichlab

Teichmann Group

Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine

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  1. celltypist Public

    A tool for semi-automatic cell type classification

    Python 330 46

  2. cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Python 101 12

  3. drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 66 4

  4. bin2cell Public

    Join subcellular Visium HD bins into cells

    Jupyter Notebook 72 3

  5. Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 53 5

  6. cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 28 3

Repositories

Showing 10 of 66 repositories
  • celcomen Public
    Jupyter Notebook 2 0 0 0 Updated Jan 23, 2025
  • cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 28 3 1 0 Updated Jan 17, 2025
  • celltypist_wiki Public

    Materials and scripts for building cell type encyclopedia table

    Python 18 3 0 0 Updated Jan 9, 2025
  • drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 66 4 7 0 Updated Dec 21, 2024
  • celltypist Public

    A tool for semi-automatic cell type classification

    Python 330 MIT 46 30 0 Updated Dec 16, 2024
  • bin2cell Public

    Join subcellular Visium HD bins into cells

    Jupyter Notebook 72 MIT 3 8 0 Updated Dec 11, 2024
  • scg_lib_structs Public

    Collections of library structure and sequence of popular single cell genomic methods

    HTML 446 95 2 0 Updated Dec 10, 2024
  • snp2cell Public

    cell type specific, trait-associated gene regulation

    Python 18 BSD-3-Clause 0 2 0 Updated Dec 3, 2024
  • vascular_atlas Public

    Repo with analysis code for the vascular atlas paper

    Jupyter Notebook 6 2 0 0 Updated Nov 22, 2024
  • thymus_spatial_atlas Public

    general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!

    Jupyter Notebook 10 2 0 0 Updated Nov 20, 2024