v1.2

• 2016/01/22 - v1.2
  • complete new architectural structure!
  • all the functions are now unit tested!
  • all manuals are now written in Roxygen2 format!
  • many functions arguments names have been modified, please check individual functions manual.
  • rTreeBind is renamed to tree.bind.
  • In as.mulTree, the argument species is now taxa.
  • mulTree output: when output chain name already exists in current directory, the function now asks if user wants to overwrite the existing files.
  • In read.mulTree, the argument mulTree.mcmc is now mulTree.chain.
  • In summary.mulTree, the argument mulTree.mcmc is now mulTree.results and the argument CI is now prob.
  • summary.mulTree now outputs a c("matrix", "mulTree") class object.
  • In plot.mulTree, the argument mulTree.mcmc must now be an object returned from summary.mulTree.