work in progress branch for dockerizing SBOLCanvas.

Dockerfile

@@ -0,0 +1,23 @@
+FROM alpine
+
+RUN apk add openjdk8 bash
+
+ENV JAVA_HOME=/usr/lib/jvm/java-1.8-openjdk
+ENV PATH="$JAVA_HOME/bin:${PATH}"
+
+WORKDIR /opt/backend
+
+COPY . .
+
+# This should be in the Dockerfile, but for now it's a script
+RUN resources/build_automation/build_backend.sh
+
+## Build angular stuff and copy into WEB-INF
+RUN apk add --update nodejs npm
+RUN npm install -g @angular/cli
+RUN resources/build_automation/build_frontend.sh
+
+# New container
+FROM tomcat:9.0-jdk8-openjdk 
+COPY --from=0 SBOLCanvasBackend/WebContent/api.war webapps
+

resources/build_automation/build_backend.sh

@@ -0,0 +1,19 @@
+#!/bin/bash
+
+BACKEND_DIR=$(pwd)/SBOLCanvasBackend
+compile_dest_dir=${BACKEND_DIR}/WebContent/WEB-INF/classes
+compile_source_dir=${BACKEND_DIR}/src
+tomcat_dependencies=$(pwd)/resources/server_automation/tomcat/apache-tomcat-9.0.26/lib
+other_dependencies=${BACKEND_DIR}/WebContent/WEB-INF/lib
+war_filename=api.war
+cur_dir=$(pwd)
+
+# Compile java files into the SBOLCanvasBackend/WebContent/WEB-INF/classes directory
+[[ -d ${compile_dest_dir} ]] && rm -rf ${compile_dest_dir} # Make sure we have a clean slate
+mkdir ${compile_dest_dir}
+
+javac -source 1.8 -target 1.8 -sourcepath ${compile_source_dir} -d ${compile_dest_dir} -cp ".:${other_dependencies}/*:${tomcat_dependencies}/*" ${compile_source_dir}/**/*.java\
+
+# Build .war file and deploy
+cd ${BACKEND_DIR}/WebContent
+jar -cf ${war_filename} *

resources/build_automation/build_frontend.sh

@@ -0,0 +1,11 @@
+#!/bin/bash
+
+echo "----------- Deploying frontend... ------------"
+
+# Build front end
+cur_dir=$(pwd) # Save away our current directory to come back to.
+cd SBOLCanvasFrontend
+npm install
+#ng build --prod --base-href=/canvas/
+ng build --prod --build-optimizer --vendor-chunk --progress --output-hashing=all --stats-json --source-map=true --base-href=/canvas/
+

resources/server_automation/deploy_all.sh

@@ -9,4 +9,4 @@ ensure_superuser
 ./deploy_backend.sh || die "Backend deployment failed"
 ./deploy_frontend.sh || die "Frontend deployment failed"
 
-echo "SBOL Canvas successfully deployed!"
+echo "SBOL Canvas successfully deployed!"