proteomic_analysis

Analysis of Proteomics result with R

Experimental design

Control -1, -2, -3， labelled with TMT126, 127, and 128 respectively;

Treat -1, -2, -3 ， labelled with TMT129, 130, and 131 respectively

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
ms181368voe		ms181368voe
tpp		tpp
uniprotFuncSpider		uniprotFuncSpider
xurh		xurh
README.md		README.md
UP000000589_2023_05_info_functions.tsv		UP000000589_2023_05_info_functions.tsv
UP000000803_2023_05_info_functions.tsv		UP000000803_2023_05_info_functions.tsv
UP000001940_2023_05_info_functions.tsv		UP000001940_2023_05_info_functions.tsv
UP000002311_2023_05_info_functions.tsv		UP000002311_2023_05_info_functions.tsv
UP000002485_2023_05_info_functions.tsv		UP000002485_2023_05_info_functions.tsv
UP000002494_2023_05_info_functions.tsv		UP000002494_2023_05_info_functions.tsv
UP000005640_2023_05_info_functions.tsv		UP000005640_2023_05_info_functions.tsv
UP000006548_2023_05.fasta		UP000006548_2023_05.fasta
UP000006548_2023_05_info_functions.tsv		UP000006548_2023_05_info_functions.tsv
proteome_id_of_species.csv		proteome_id_of_species.csv
step10_ipapathwayplot.R		step10_ipapathwayplot.R
step11_heatmap_custom.R		step11_heatmap_custom.R
step1_data_clean.R		step1_data_clean.R
step2_qc_identification.R		step2_qc_identification.R
step3_qc_quantification.R		step3_qc_quantification.R
step4_filter_deps.R		step4_filter_deps.R
step5_export_deps_tables.R		step5_export_deps_tables.R
step6_volcano_text.R		step6_volcano_text.R
step7_gopathway.R		step7_gopathway.R
step8_gsea.R		step8_gsea.R
step9_TFmap.R		step9_TFmap.R