nf-sajr

Run the workflow:

nextflow run nf-sajr -params-file nf-sajr/params.json -entry images -profile studio && \
nextflow run nf-sajr -params-file nf-sajr/params.json -entry config_template -profile studio && \
nextflow run nf-sajr -params-file nf-sajr/params.json -entry sajr_processing -profile studio && \
nextflow run nf-sajr -params-file nf-sajr/params.json -entry sajr_diff -profile studio && \
nextflow run nf-sajr -params-file nf-sajr/params.json -entry upload -profile studio

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## Contributing

Make a commit, check the last tag, add a new one, push it and make a release:

git add -A . && git commit -m "" && git push git describe --abbrev=0 --tags git tag -e -a HEAD git push origin --tags gh release create

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