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Merge dev changes#5

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DonFreed merged 13 commits intomainSentieon/sentieon-cli:mainfrom devSentieon/sentieon-cli:devCopy head branch name to clipboardSep 30, 2024

+411-58

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Commits on Jul 24, 2024

• Updates to vcf_mod.py

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• Update README.md

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• Add mosdepth for alignment QC

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• Improve logging

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Commits on Aug 14, 2024

• Handle non-unicode output in version strings

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Commits on Sep 9, 2024

• Add support for haploid gVCFs

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• Create a single output VCF for snv and indels

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• Add a dockerfile

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• Update DNAscope default arguments

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Commits on Sep 17, 2024

• Add -Y to minimap2 by default

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Commits on Sep 30, 2024

• Install multiqc for the GH tests

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• Generalize the gvcf_combine script by ploidy

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• Update github actions

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