Minor fixes

Sentieon · Dec 10, 2024 · 0998b86 · 0998b86
1 parent 8488c5a
commit 0998b86
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/sentieon_cli/dag.py b/sentieon_cli/dag.py
@@ -35,7 +35,7 @@ def add_job(self, job: Job, dependencies: Optional[Set[Job]] = None):
                 )
 
         if isinstance(dependencies, set) and len(dependencies) > 0:
-            self.waiting_jobs[job] = dependencies
+            self.waiting_jobs[job] = dependencies.copy()
             for dependency in dependencies:
                 downstream = self.planned_jobs.setdefault(dependency, [])
                 downstream.append(job)

diff --git a/sentieon_cli/dnascope_longread.py b/sentieon_cli/dnascope_longread.py
@@ -926,10 +926,12 @@ def dnascope_longread(
     realign_jobs: Set[Job] = set()
     if align:
         sample_input, realign_jobs = align_inputs(**locals())
-        map(dag.add_job, realign_jobs)
+        for job in realign_jobs:
+            dag.add_job(job)
     aligned_fastq, align_jobs = align_fastq(**locals())
     sample_input.extend(aligned_fastq)
-    map(dag.add_job, align_jobs)
+    for job in align_jobs:
+        dag.add_job(job)
 
     if not skip_mosdepth:
         mosdpeth_jobs = mosdepth(**locals())