chore(schematic): remove Schematic projects and configuration (#2978)

.devcontainer/devcontainer.json

@@ -67,8 +67,8 @@
     }
   },
   "forwardPorts": [
-    2432, 3306, 3333, 4200, 4211, 5000, 5200, 5432, 5601, 7010, 7443, 7200, 7888, 8010, 8071, 8000,
-    8080, 8081, 8082, 8084, 8085, 8086, 8090, 8200, 8888, 8889, 9200, 9411, 27017
+    2432, 3306, 3333, 4200, 4211, 5000, 5200, 5432, 5601, 8010, 8071, 8000, 8080, 8081, 8082, 8084,
+    8085, 8086, 8090, 8200, 8888, 8889, 9200, 9411, 27017
   ],
   "portsAttributes": {
     "2432": {
@@ -107,22 +107,6 @@
       "label": "openchallenges-opensearch-dashboards",
       "onAutoForward": "silent"
     },
-    "7010": {
-      "label": "schematic-api-docs",
-      "onAutoForward": "silent"
-    },
-    "7443": {
-      "label": "schematic-api",
-      "onAutoForward": "silent"
-    },
-    "7200": {
-      "label": "schematic-app",
-      "onAutoForward": "silent"
-    },
-    "7888": {
-      "label": "schematic-notebook",
-      "onAutoForward": "silent"
-    },
     "8000": {
       "label": "openchallenges-apex",
       "onAutoForward": "silent"

.github/CODEOWNERS

@@ -21,11 +21,6 @@
 /apps/sage/ @tschaffter
 /libs/sage/ @tschaffter
 
-# Schematic
-/apps/schematic/ @andrewelamb @GiaJordan @linglp @milen-sage
-/libs/schematic/ @andrewelamb @GiaJordan @linglp @milen-sage
-/libs/schematic/api-client-r/ @andrewelamb @lakikowolfe @afwillia
-
 /apps/agora/ @Sage-Bionetworks/sage-monorepo-agora
 /libs/agora/ @Sage-Bionetworks/sage-monorepo-agora
 

.github/ISSUE_TEMPLATE/1-bug.yml

@@ -27,7 +27,6 @@ body:
         - Sage
         - Sage Monorepo
         - Sandbox
-        - Schematic
         - Synapse
         - Other
   - type: textarea

.github/ISSUE_TEMPLATE/2-feature.yml

@@ -16,7 +16,6 @@ body:
         - Sage
         - Sage Monorepo
         - Sandbox
-        - Schematic
         - Synapse
         - Other
   - type: textarea

.github/ISSUE_TEMPLATE/3-documentation.yml

@@ -16,7 +16,6 @@ body:
         - Sage
         - Sage Monorepo
         - Sandbox
-        - Schematic
         - Synapse
         - Other
   - type: checkboxes

.github/ISSUE_TEMPLATE/4-story.yml

@@ -16,7 +16,6 @@ body:
         - Sage
         - Sage Monorepo
         - Sandbox
-        - Schematic
         - Synapse
         - Other
   - type: textarea

.github/workflows/lint-dockerfiles.yml

@@ -9,7 +9,6 @@ on:
       - 'openchallenges/**'
       - 'sage-monorepo/**'
       - 'sage/**'
-      - 'schematic/**'
   pull_request:
 
 jobs:

.github/workflows/lint-pr.yml

@@ -34,7 +34,6 @@ jobs:
             sage
             sage-monorepo
             sandbox
-            schematic
             synapse
           # Configure that a scope must always be provided.
           requireScope: false

.github/workflows/sonar-scan-push.yml

@@ -9,7 +9,6 @@ on:
       - 'openchallenges/**'
       - 'sage-monorepo/**'
       - 'sage/**'
-      - 'schematic/**'
 
 jobs:
   sonar:

.stylelintignore

@@ -8,6 +8,3 @@ dist/
 # Ignore all test reports
 coverage/
 reports/
-
-# Ignore selected project folders
-apps/schematic/api/great_expectations

CODE_QUALITY.md

@@ -25,5 +25,5 @@
 | [edam-etl](https://sonarcloud.io/summary/overall?id=openchallenges-edam-etl)                         | ![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-edam-etl&metric=alert_status)             | ![Reliability Rating](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-edam-etl&metric=reliability_rating)             | ![Maintainability Rating](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-edam-etl&metric=sqale_rating)             | ![Technical Debt](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-edam-etl&metric=sqale_index)             | ![Coverage](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-edam-etl&metric=coverage)             |
 | [image-service](https://sonarcloud.io/summary/overall?id=openchallenges-image-service)               | ![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-image-service&metric=alert_status)        | ![Reliability Rating](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-image-service&metric=reliability_rating)        | ![Maintainability Rating](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-image-service&metric=sqale_rating)        | ![Technical Debt](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-image-service&metric=sqale_index)        | ![Coverage](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-image-service&metric=coverage)        |
 | [organization-service](https://sonarcloud.io/summary/overall?id=openchallenges-organization-service) | ![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-organization-service&metric=alert_status) | ![Reliability Rating](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-organization-service&metric=reliability_rating) | ![Maintainability Rating](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-organization-service&metric=sqale_rating) | ![Technical Debt](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-organization-service&metric=sqale_index) | ![Coverage](https://sonarcloud.io/api/project_badges/measure?project=openchallenges-organization-service&metric=coverage) |
-| **Schematic**                                                                                        |                                                                                                                                          |
-| [api](https://sonarcloud.io/summary/overall?id=schematic-api)                                        | ![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=schematic-api&metric=alert_status)                       | ![Reliability Rating](https://sonarcloud.io/api/project_badges/measure?project=schematic-api&metric=reliability_rating)                       | ![Maintainability Rating](https://sonarcloud.io/api/project_badges/measure?project=schematic-api&metric=sqale_rating)                       | ![Technical Debt](https://sonarcloud.io/api/project_badges/measure?project=schematic-api&metric=sqale_index)                       | ![Coverage](https://sonarcloud.io/api/project_badges/measure?project=schematic-api&metric=coverage)                       |
+
+|

README.md

@@ -115,11 +115,10 @@ Join the conversation and help the community.
 
 ## Products
 
-- Agora (evaluation)
+- Agora
 - iAtlas
 - MODEL-AD
 - OpenChallenge
-- Schematic
 - Synapse (evaluation)
 
 <!-- Links -->

apps/iatlas/api/install.sh

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-PYTHON_VERSION="3.8.20"
+PYTHON_VERSION=$(cat ".python-version")
 
 pyenv install --skip-existing $PYTHON_VERSION
 

apps/iatlas/data/install.sh

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-PYTHON_VERSION="3.11.10"
+PYTHON_VERSION=$(cat ".python-version")
 
 pyenv install --skip-existing $PYTHON_VERSION
 

apps/openchallenges/data-lambda/.python-version

@@ -1 +1 @@
-3.13.0
+3.11.10

apps/openchallenges/data-lambda/pyproject.toml

@@ -6,7 +6,7 @@ authors = ["Verena Chung <[email protected]>"]
 readme = "README.md"
 
 [tool.poetry.dependencies]
-python = "3.13.0"
+python = "3.11.10"
 requests = "2.32.3"
 gspread = "6.1.4"
 pandas = "2.2.3"