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comment out version until we can pull from config file
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rxu17 committed Jan 11, 2024
1 parent 2267c4a commit b3d6491
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Showing 2 changed files with 4 additions and 4 deletions.
4 changes: 2 additions & 2 deletions genie/process_mutation.py
Original file line number Diff line number Diff line change
Expand Up @@ -202,14 +202,14 @@ def process_mutation_workflow(
"syn22053204",
ifcollision="overwrite.local",
downloadLocation=genie_config["genie_annotation_pkg"],
version=1, # TODO: This should pull from a config file in the future
# version=1, # TODO: This should pull from a config file in the future
)
# Genome Nexus Jar file
syn.get(
"syn22084320",
ifcollision="overwrite.local",
downloadLocation=genie_config["genie_annotation_pkg"],
version=13, # TODO: This should pull from a config file in the future
# version=13, # TODO: This should pull from a config file in the future
)

annotated_maf_path = annotate_mutation(
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4 changes: 2 additions & 2 deletions tests/test_process_mutation.py
Original file line number Diff line number Diff line change
Expand Up @@ -104,13 +104,13 @@ def test_process_mutation_workflow(syn, genie_config):
"syn22053204",
ifcollision="overwrite.local",
downloadLocation=genie_annotation_pkg,
version=1, # TODO: This should pull from a config file in the future
# version=1, # TODO: This should pull from a config file in the future
),
call(
"syn22084320",
ifcollision="overwrite.local",
downloadLocation=genie_annotation_pkg,
version=13, # TODO: This should pull from a config file in the future
# version=13, # TODO: This should pull from a config file in the future
),
]
center = "SAGE"
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