remove row-based validation error message (#563)

Sage-Bionetworks · May 1, 2024 · 776e8d9 · 776e8d9
1 parent 4c0f625
commit 776e8d9
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Showing 2 changed files with 0 additions and 12 deletions.
diff --git a/genie_registry/clinical.py b/genie_registry/clinical.py
@@ -220,8 +220,6 @@ def _check_year_death_validity_message(
         error = (
             "Patient Clinical File: Please double check your YEAR_DEATH and YEAR_CONTACT columns. "
             "YEAR_DEATH must be >= YEAR_CONTACT. "
-            f"There are {len(invalid_year_death_indices)} row(s) with YEAR_DEATH < YEAR_CONTACT. "
-            f"The row number(s) this occurs in are: {invalid_year_death_indices.tolist()}. Please correct.\n"
         )
     return error, warning
 
@@ -271,8 +269,6 @@ def _check_int_dod_validity_message(
         error = (
             "Patient Clinical File: Please double check your INT_DOD and INT_CONTACT columns. "
             "INT_DOD must be >= INT_CONTACT. "
-            f"There are {len(invalid_int_dod_indices)} row(s) with INT_DOD < INT_CONTACT. "
-            f"The row number(s) this occurs in are: {invalid_int_dod_indices.tolist()}. Please correct.\n"
         )
     return error, warning
 

diff --git a/tests/test_clinical.py b/tests/test_clinical.py
@@ -715,8 +715,6 @@ def test_errors__validate(clin_class):
             "'Unknown', 'Not Collected', 'Not Released', '>89', '<18'.\n"
             "Patient Clinical File: Please double check your YEAR_DEATH "
             "and YEAR_CONTACT columns. YEAR_DEATH must be >= YEAR_CONTACT. "
-            "There are 1 row(s) with YEAR_DEATH < YEAR_CONTACT. "
-            "The row number(s) this occurs in are: [4]. Please correct.\n"
             "Patient Clinical File: Please double check your INT_CONTACT "
             "column, it must be an integer, '>32485', '<6570', 'Unknown', "
             "'Not Released' or 'Not Collected'.\n"
@@ -728,8 +726,6 @@ def test_errors__validate(clin_class):
             "'Not Released' or 'Not Collected'.\n"
             "Patient Clinical File: Please double check your INT_DOD "
             "and INT_CONTACT columns. INT_DOD must be >= INT_CONTACT. "
-            "There are 1 row(s) with INT_DOD < INT_CONTACT. "
-            "The row number(s) this occurs in are: [2]. Please correct.\n"
             "Patient: you have inconsistent redaction and text values in "
             "YEAR_CONTACT, INT_CONTACT.\n"
             "Patient: you have inconsistent redaction and text values in "
@@ -1147,8 +1143,6 @@ def test__check_year_death_validity(df, expected_indices):
             pd.Index([2, 3]),
             "Patient Clinical File: Please double check your YEAR_DEATH and YEAR_CONTACT columns. "
             "YEAR_DEATH must be >= YEAR_CONTACT. "
-            "There are 2 row(s) with YEAR_DEATH < YEAR_CONTACT. "
-            "The row number(s) this occurs in are: [2, 3]. Please correct.\n",
         ),
     ],
     ids=[
@@ -1226,8 +1220,6 @@ def test__check_int_dod_validity(df, expected_indices):
             pd.Index([2, 3]),
             "Patient Clinical File: Please double check your INT_DOD and INT_CONTACT columns. "
             "INT_DOD must be >= INT_CONTACT. "
-            "There are 2 row(s) with INT_DOD < INT_CONTACT. "
-            "The row number(s) this occurs in are: [2, 3]. Please correct.\n",
         ),
     ],
     ids=[