remove release param based on pr comments

Sage-Bionetworks · Jan 10, 2024 · 63c2af4 · 63c2af4
1 parent 1a75eae
commit 63c2af4
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Showing 2 changed files with 0 additions and 7 deletions.
diff --git a/genie/process_mutation.py b/genie/process_mutation.py
@@ -241,7 +241,6 @@ def process_mutation_workflow(
         full_error_report=full_error_report,
         syn=syn,
         errors_folder_synid=genie_config["center_config"][center]["errorsSynId"],
-        release="test",
     )
     return annotation_paths.merged_maf_path
 
@@ -304,7 +303,6 @@ def store_annotation_error_reports(
     full_error_report: pd.DataFrame,
     syn: Synapse,
     errors_folder_synid: str,
-    release: str,
 ) -> None:
     """Stores the annotation error reports to synapse
 
@@ -313,14 +311,12 @@ def store_annotation_error_reports(
         syn (synapseclient.Synapse): synapse client object
         errors_folder_synid (str): synapse id of error report folder
             to store reports in
-        release (str): name of the release for this processing run
     """
     full_error_report.to_csv("failed_annotations_report.tsv", sep="\t", index=False)
     load.store_file(
         syn=syn,
         filepath="failed_annotations_report.tsv",
         parentid=errors_folder_synid,
-        version_comment=release,
     )
 
 

diff --git a/tests/test_process_mutation.py b/tests/test_process_mutation.py
@@ -175,7 +175,6 @@ def test_process_mutation_workflow(syn, genie_config, annotation_paths):
             full_error_report=sample_error_report,
             syn=syn,
             errors_folder_synid="syn53239079",
-            release="test",
         )
         assert maf == annotation_paths.merged_maf_path
 
@@ -242,13 +241,11 @@ def test_store_annotation_error_reports(self, syn, test_error_report):
                 full_error_report=test_error_report,
                 syn=syn,
                 errors_folder_synid=errors_folder_synid,
-                release="test",
             )
             patch_store.assert_called_once_with(
                 syn=syn,
                 filepath="failed_annotations_report.tsv",
                 parentid=errors_folder_synid,
-                version_comment="test",
             )