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thomasyu888 committed Jan 13, 2024
1 parent 99be1f7 commit 391d2fd
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -66,7 +66,7 @@ These are instructions on how you would develop and test the pipeline locally.
If you are having trouble with the above, try installing via `pipenv`
1. Specify a python version that is supported by this repo:
1. Specify a python version that is supported by this repo:
```pipenv --python <python_version>```
1. [pipenv install from requirements file](https://docs.pipenv.org/en/latest/advanced.html#importing-from-requirements-txt)
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4 changes: 3 additions & 1 deletion genie/__main__.py
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Expand Up @@ -85,7 +85,9 @@ def build_parser():
)

parser_validate.add_argument(
"--oncotree_link", type=str, help="Specify an oncotree url when validating your clinical "
"--oncotree_link",
type=str,
help="Specify an oncotree url when validating your clinical "
"file "
"(e.g: https://oncotree.info/api/tumorTypes/tree?version=oncotree_2021_11_02). "
"By default the oncotree version used will be specified in this entity: "
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