Update TODO.md

TODO.md

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 # nf-artist
 nf-artist is a Nextflow pipeline to generate interactive multiplexed image explorations and thumbnails.
 
+- Add CI testing in Github action using included test data in `data/` and samplesheet `data/test_samplesheet.csv`
+- Move logic on if minerva story or miniature thumbnail are run out of samplesheet and into `params`
+
 ## Minerva
-- [ ] Ensure H&E images are rendered with a fixed legend
-- [ ] Allow for custom descriptions to be provided in the samplesheet and added into the Minerva story
+- ✅ ~~Ensure H&E images are rendered with a fixed legend~~
+- Allow for custom descriptions to be provided in the samplesheet and added into the Minerva story
+- Update to new version of Minerva with channel selection
 
 ## Miniature
+
+- Split `make_miniature` into two processes, one to run the miniature script for multiplexed images and one (that can have lower resource requirements) that makes the brightfield thumbnail for H&E images with TiffSlide