Code

Breaking changes with PCU#433

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cwsmith merged 204 commits intoSCOREC:developSCOREC/core:developfrom jacobmerson:pcu-object-breakingjacobmerson/core:pcu-object-breakingCopy head branch name to clipboardDec 6, 2024

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Commits on Mar 28, 2023

• Add state to PCU mpi interface.

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• Compile on gcc+fix bug

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Commits on Mar 29, 2023

• remove virtual function table for pcu_mpi

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• Put PCU state data into a structure

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• Use consistent initialization functions for MPI.

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• Add PCU2 interface that takes the PCU state struct

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• add PCU2.h to install files

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• fix compiler warnings

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Commits on Mar 30, 2023

• constify mpi functions

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• first pass of PCU with making use of a high level object

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• remove unused functions

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• Fix gcc compilation

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Commits on Mar 31, 2023

• fix bug

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• remove unnecessary whitespace

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• bump version

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Commits on Jan 11, 2024

• Add state to PCU mpi interface.

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• Compile on gcc+fix bug

  

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• remove virtual function table for pcu_mpi

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• Put PCU state data into a structure

  

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• Use consistent initialization functions for MPI.

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• Add PCU2 interface that takes the PCU state struct

  

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• add PCU2.h to install files

  

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• fix compiler warnings

  

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• constify mpi functions

  

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• first pass of PCU with making use of a high level object

  

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• remove unused functions

  

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• Fix gcc compilation

  

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• fix bug

  

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• remove unnecessary whitespace

  

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• bump version

  

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• Merge pull request #1 from flagdanger/pcu-object

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• added pcu_ as a variable of Mesh

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• Added getPCU(), and beginning to change pcu functions

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Commits on Jan 16, 2024

• Can access global_pcu and some editing of function calls in /apf

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• Changed functions in more files up to folder ma

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Commits on Jan 17, 2024

• More PCU changes

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Commits on Jan 23, 2024

• More fixing

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Commits on Jan 24, 2024

• ph and pumi changes

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Commits on Jan 25, 2024

• more cleaning

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• test folder fixes

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• More test folder fixes

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Commits on Jan 26, 2024

• fixed last of test folder and made PCU2 .h and .cc

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Commits on Jan 30, 2024

• Re-checked apf and pcu2 fix

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• re-checking up to ma

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• ma folder redo

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Commits on Feb 5, 2024

• more fixes

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• Making new versions of functions to handle PCUHandle

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Commits on Feb 7, 2024

• phCook changes, changed phInput openfile_read to take PCUHandle, and it brings up issues

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Commits on Feb 8, 2024

• Reverting phasta changes

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Commits on Feb 9, 2024

• mds folder changed to use PCU2

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Commits on Feb 12, 2024

• Last mds fixes (apfMDS.cc still has some issues)

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• Getting rid of include PCU.h in spots I missed

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• All parma changes I can do (lots of files need some workaround)

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• small pcu change

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• pcu_getglobal changes

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• apfCap fix

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• crv fixes

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• dsp pcu fix

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• gmi cap and sim pcu fixes

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• ma pcu fixes

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• changing apfMDS.cc back to original, still needs work

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• pumi pcu fixes

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• spr pcu fix

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• stk pcu fixes

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• changing repartition.cc back to original, still needs work

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Commits on Feb 14, 2024

• zoltan pcu fixes

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Commits on Mar 11, 2024

• pumi interface fixes, replacing old PCU uses

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• files in test folder changed to use new pumi - pcu interface

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Commits on Mar 12, 2024

• made default PCU arguments for Mesh functions and fixed old pcu issues, there are still some duplicate functions: loadMdsMesh, repeat, and expand that can be removed or made to take a default argument

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• repartition test file rebuilt to use new pcu

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Commits on Mar 14, 2024

• apf folder using new pcu except apfNumbering.cc

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Commits on Mar 15, 2024

• ma folder changed to use new pcu, changed some uses of print() in crv folder

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Commits on Mar 18, 2024

• ma folder using new pcu, all tests passing

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Commits on Mar 20, 2024

• changed phastaio_initStats to not check if PCU is intitialized. Also using PCUHandle and PCU2 in phiotimer.h

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Commits on Mar 25, 2024

• Phasta folder changed to use new PCU, passes tests.

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• small touchups in test files, apfMDS.cc, and apf_sim

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• Parma folder fixes, only thing not changed is parma_group.cc, all tests pass. Making a new branch from here testing two different methods of fixing parma_group

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Commits on Mar 27, 2024

• added switchPCU to apfMesh to use in parma_group.cc

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Commits on Mar 28, 2024

• parma_group.cc fixed to use switchPCU, may need to change later

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• parallelReduce function fix

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Commits on Apr 1, 2024

• crv corrected makeEmptyMdsMesh use

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• ma corrected makeEmptyMdsMesh use

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• fixed BoxBuilder class and loadMdsFromANSYS to take an optional PCUObj

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• got rid of undef PCU_FORMAT_ATTRIBUTE, fixed compilation errors that would come up

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• phasta - fixed createMdsMesh use

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• got rid of an #include PCU.h

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• #include PCU.h deletion

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• spr folder fixes

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• 1d test file

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• align test file

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• aniso_ma_test file

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• ansys test file

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• assert_timing test file

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• balance test file

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• bezierElevation test file

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• box test file

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• collapse test file

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• poisson test file

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Commits on Apr 9, 2024

• mdsCGNS PCUHandle fix

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• maximal independent set fixes

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• Parma_GroupCode run() function default changed to take a PCUObj

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• Test files fixed

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Commits on Apr 17, 2024

• loadMdsPart take optional PCU

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• loadMdsFromGmsh to take PCU

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• fixed runInGroups() to work with new PCU

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• reverted the run function in GroupCode structs to not take a PCU

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• test files fixed to use PCUObj; all pass

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Commits on Apr 26, 2024

• Mesh interface fixes

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• Test files changed to use new PCU

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Commits on Apr 29, 2024

• Added comments for uses of switchPCU

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• added back reeResidualFunctionals.cc

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• Delete config.sh

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• Merge pull request #2 from flagdanger/pcu-object

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• Merge branch 'develop' into pcu-object

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• Warning fixes

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• Merge branch 'pcu-object' of https://github.com/flagdanger/core into pcu-object

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Commits on Apr 30, 2024

• Merge pull request #3 from flagdanger/pcu-object

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Commits on May 2, 2024

• compiler errors with phLinks.cc fixed

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Commits on May 6, 2024

• .github fix

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• describe.cc getPeak() and getChunks() removed

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Commits on Jun 3, 2024

• removed last uses of old pcu, removed pcu.cc and .h, got rid of default nullptr PCUObj arguments

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Commits on Jul 1, 2024

• small fixes

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Commits on Jul 5, 2024

• PCU2 using PCU naming, changed PCUHandle to PCU_t

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Commits on Jul 9, 2024

• pumi_sys functions using pumi::instance to access PCU, added setPCU and getPCU functions to pumi::instance()

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• added pumi_load_pcu to replace the use of setPCU, removed PCUObj as an argument for pumi mesh creators

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Commits on Jul 31, 2024

• apfSim typo fix

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• pumi_rank() replacements

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Commits on Aug 6, 2024

• simmetrix create mesh typo fixed

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• Merge remote-tracking branch 'SCOREC/develop' into pcu-object-breaking

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• phLinks ptr issue fix

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• phasta convert fixes

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Commits on Aug 8, 2024

• test files small bugs

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• Revert "test files small bugs"

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• removed config file

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Commits on Aug 16, 2024

• PCU.h small fix

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• Delete config.sh

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Commits on Aug 19, 2024

• long dereference chains fixed

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• PCUObj renamed to PCU, PCU remaned to PCU_C

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• Specified argument data type for templated functions PCU:: Add, Max, and Min

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• Capstone updated to use PCU Object

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Commits on Aug 21, 2024

• small fixes

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Commits on Aug 26, 2024

• Typo cleaning

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• Test files changed to not use unique_ptr

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Commits on Aug 27, 2024

• Removed uses of unique_ptr in other folders besides test

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Commits on Aug 29, 2024

• Removed semi colon after Macro

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• CGNS fixes

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Commits on Oct 10, 2024

• cgns fixes

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Commits on Nov 1, 2024

• unique ptr removed

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Commits on Nov 12, 2024

• Update apfElement.cc

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• spr: add thesis section to ref

  

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• clean under asan sanitizer with gcc 12.3.0

  

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• add sim+cgns build

  

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• formatting

  

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• move nightly test+merge to rhel9

  

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• user name change

  

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• add approved self-hosted user

  

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• missed a paren

  

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• need module command

  

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• missed the other env

  

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• append to log file

  

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• heredoc for multiline message

  

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• complete user cmake example

  

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• install and build user project

  

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• set install path

  

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• fix typo

  

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• fix ci conditional

  

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• compiler comparison attempt

  

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• update checkout actions

  

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• name is a field of the compiler entry

  

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• Set bob install dir to CMAKE_LIBDIR

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• Replace other lib with LIBDIR and bin with BINDIR

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• Replace include with CMAKE_INSTALL_INCLUDEDIR

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• Fix logic checking periodic model faces

  

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• spell check

  

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• Add apf::smoothCAPAnisoSizes

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• Add apf::smoothCAPAnisoSizes compile flags

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• Add feature test for sizing metric tool

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• Add apf::smoothCAPAnisoSizes compilation test

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• fix: Move function call outside of debug assert

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• Clarify that orthogonal basis frames are columns (SCOREC#459)

  

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• Implement capstone gmi functions

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• Remove FIXME and replace with comment

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• Add gmi_cap isInClosureOf test

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• Add test/cap_closestPoint

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• Fix smoothCAPAnisoSizes eigenvalues and transpose

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• fix: Correct smoothCAPAnisoSizes param order

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• increase versions for simmodsuite 2025.0.241016

  

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• simplify and improve logic for setting C++ standard

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• bob_set_cxx_standard should only be called once

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• copy inputs needed for smoke tests to repo

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• Moved capStone2VTK to test/cap2vtk

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• Remove exe sources which are not in CMake

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• Move some capstone_clis to test

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• Remove capStoneAnisoAdaptWing

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• Move capStoneSizeFields to test

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• Remove capStoneAttachSolution.cc

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• fix capGeomTest.cc issue

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• doc folder guide changed to use new PCU

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• PCU.cc documentation

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• Remove exe sources which are not in CMake

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• generate: fix mem leaks of simmodsuite objects

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• Fix unused variable warning introduced by SCOREC#446 (SCOREC#453)

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• test globus (SCOREC#466) - refactor globus compute scripts

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• Merge branch 'develop' into pcu-object-breaking

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