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anitaapplegarth committed Jan 22, 2025
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Expand Up @@ -71,7 +71,7 @@ This structure is created using [EpiGeoPop](https://github.com/SABS-R3-Epidemiol
In summary, the spatial structure for a region is generated using EpiGeoPop. This tool exports into a csv file the number of households, places, and individuals for each microcell. It also produces a Population Density map in the ```outputs/countries/<your_country>.pdf```, an example of Andorra shown in Figure 3.

<figure>
<img src="./images/Andorra.pdf" alt="Population density map of Andorra">
<img src="./images/Andorra.png" alt="Population density map of Andorra">
<figcaption><i>Figure 3. Example output: Population density map of Andorra.</i></figcaption>
</figure>

Expand All @@ -84,6 +84,7 @@ Once the data for your country has been extracted, the simulation can be configu
<figcaption><i>Figure 4. Overview of simulation workflow: These steps are required to run a simulation.</i></figcaption>
</figure>


The following parameters are essential and need to be stated by the user to run a simulation:

* Name of the path to the csv file from EpiGeoPop
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