Merge pull request #8 from SABS-R3-Epidemiology/anita_testing #115
Annotations
13 warnings
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Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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Run r-lib/actions/setup-r@v2
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Run r-lib/actions/setup-r@v2
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Lint:
R/simulation_epigeopop.r#L14
file=R/simulation_epigeopop.r,line=14,col=9,[object_usage_linter] no visible global function definition for 'initialize_simulation_env'
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Lint:
R/simulation_epigeopop.r#L21
file=R/simulation_epigeopop.r,line=21,col=9,[object_usage_linter] no visible global function definition for 'configure_parameters'
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Lint:
R/simulation_epigeopop.r#L56
file=R/simulation_epigeopop.r,line=56,col=17,[object_usage_linter] no visible global function definition for 'create_epigeopop_population'
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Lint:
R/simulation_epigeopop.r#L61
file=R/simulation_epigeopop.r,line=61,col=10,[object_usage_linter] no visible global function definition for 'run_geopop_sim'
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Lint:
R/simulation_epigeopop.r#L67
file=R/simulation_epigeopop.r,line=67,col=14,[object_usage_linter] no visible global function definition for 'process_simulation_data'
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Lint:
R/simulation_epigeopop.r#L73
file=R/simulation_epigeopop.r,line=73,col=15,[object_usage_linter] no visible global function definition for 'create_sir_plot'
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Lint:
R/simulation_epigeopop.r#L74
file=R/simulation_epigeopop.r,line=74,col=3,[object_usage_linter] no visible global function definition for 'save_sir_plot'
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Lint:
R/simulation_epigeopop.r#L77
file=R/simulation_epigeopop.r,line=77,col=14,[object_usage_linter] no visible global function definition for 'plot_rt_curves'
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Lint:
R/simulation_epigeopop.r#L82
file=R/simulation_epigeopop.r,line=82,col=14,[object_usage_linter] no visible global function definition for 'create_serial_interval_plot'
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Lint:
R/simulation_epigeopop.r#L82
file=R/simulation_epigeopop.r,line=82,col=42,[function_left_parentheses_linter] Left parenthesis should be on the same line as the function's symbol.
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