Support docker-compose for local development

RNAcentral · May 20, 2019 · 28a84f0 · 28a84f0
1 parent aa83698
commit 28a84f0
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Showing 3 changed files with 18 additions and 8 deletions.
diff --git a/docker-compose.yml b/docker-compose.yml
@@ -3,13 +3,15 @@ version: '2'
 services:
   producer:
     restart: always
-    build: ./producer
+    build:
+      context: .
+      dockerfile: sequence_search/producer/Dockerfile
     ports:
       - "8002:8002"
     depends_on:
       - postgres
     volumes:
-      - ./producer/producer:/producer
+      - ./:/rnacentral
     environment:
       ENVIRONMENT: "DOCKER-COMPOSE"
       POSTGRES_USER: docker
@@ -22,12 +24,14 @@ services:
 
   consumer:
     restart: always
-    build: ./consumer
+    build:
+      context: .
+      dockerfile: sequence_search/consumer/Dockerfile
     ports:
       - "8000:8000"
       - "8001:8001"
     volumes:
-      - ./consumer/consumer:/consumer
+      - ./:/rnacentral
     environment:
       ENVIRONMENT: "DOCKER-COMPOSE"
       HOST: "0.0.0.0"
@@ -36,6 +40,8 @@ services:
       PRODUCER_PORT: "8002"
     stdin_open: true
     tty: true
+    depends_on:
+      - producer
 #    entrypoint: sleep infinity  # if we need to debug
 
   postgres:

diff --git a/sequence_search/consumer/Dockerfile b/sequence_search/consumer/Dockerfile
@@ -30,8 +30,10 @@ RUN curl -OL http://eddylab.org/software/hmmer/hmmer-3.2.1.tar.gz && \
     make install && \
     cd easel; make install
 
-ADD requirements.txt .
+ADD sequence_search/requirements.txt .
 
 RUN pip3 install -r requirements.txt
 
-CMD python36 -m consumer.main
+EXPOSE 8000
+
+ENTRYPOINT cd /rnacentral && python36 -m sequence_search.consumer
diff --git a/sequence_search/producer/Dockerfile b/sequence_search/producer/Dockerfile
@@ -22,8 +22,10 @@ RUN yum install -y \
 
 RUN easy_install-3.6 pip
 
-ADD requirements.txt .
+ADD sequence_search/requirements.txt .
 
 RUN pip3 install -r requirements.txt
 
-CMD python36 -m producer.models && python36 -m producer.main
+EXPOSE 8002
+
+ENTRYPOINT cd /rnacentral && python36 -m sequence_search.db && python3 -m sequence_search.producer