apply isort changes

Changes were automatically applied by running:
python -m isort .

Signed-off-by: James Butler <[email protected]>

monai/__init__.py

@@ -11,12 +11,12 @@
 
 from __future__ import annotations
 
+import logging
 import os
 import sys
-import logging
 import warnings
-from ._version import get_versions
 
+from ._version import get_versions
 
 old_showwarning = warnings.showwarning
 

monai/apps/detection/transforms/array.py

@@ -15,9 +15,8 @@
 
 from __future__ import annotations
 
-from typing import Any
-
 from collections.abc import Sequence
+from typing import Any
 
 import numpy as np
 import torch

monai/apps/detection/utils/anchor_utils.py

@@ -39,7 +39,6 @@
 
 from __future__ import annotations
 
-
 from collections.abc import Sequence
 
 import torch

monai/apps/pathology/engines/utils.py

@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import Any
-
 from collections.abc import Sequence
+from typing import Any
 
 import torch
 

monai/apps/pathology/inferers/inferer.py

@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import Any, Callable
-
 from collections.abc import Sequence
+from typing import Any, Callable
 
 import numpy as np
 import torch

monai/apps/pathology/metrics/lesion_froc.py

@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import TYPE_CHECKING, Any
-
 from collections.abc import Iterable
+from typing import TYPE_CHECKING, Any
 
 import numpy as np
 

monai/apps/pathology/transforms/post/array.py

@@ -12,9 +12,8 @@
 from __future__ import annotations
 
 import warnings
-from typing import Callable
-
 from collections.abc import Sequence
+from typing import Callable
 
 import numpy as np
 import torch

monai/bundle/reference_resolver.py

@@ -13,11 +13,9 @@
 
 import re
 import warnings
-from collections.abc import Sequence
+from collections.abc import Iterator, Sequence
 from typing import Any
 
-from collections.abc import Iterator
-
 from monai.bundle.config_item import ConfigComponent, ConfigExpression, ConfigItem
 from monai.bundle.utils import DEPRECATED_ID_MAPPING, ID_REF_KEY, ID_SEP_KEY
 from monai.utils import allow_missing_reference, look_up_option

monai/bundle/workflows.py

@@ -16,13 +16,12 @@
 import sys
 import time
 from abc import ABC, abstractmethod
+from collections.abc import Sequence
 from copy import copy
 from logging.config import fileConfig
 from pathlib import Path
 from typing import Any
 
-from collections.abc import Sequence
-
 from monai.apps.utils import get_logger
 from monai.bundle.config_parser import ConfigParser
 from monai.bundle.properties import InferProperties, MetaProperties, TrainProperties

monai/config/type_definitions.py

@@ -12,9 +12,8 @@
 from __future__ import annotations
 
 import os
-from typing import TypeVar, Union
-
 from collections.abc import Collection, Hashable, Iterable, Sequence
+from typing import TypeVar, Union
 
 import numpy as np
 import torch

monai/data/meta_obj.py

@@ -13,11 +13,10 @@
 
 import itertools
 import pprint
+from collections.abc import Iterable
 from copy import deepcopy
 from typing import Any
 
-from collections.abc import Iterable
-
 import numpy as np
 import torch
 

monai/data/meta_tensor.py

@@ -13,11 +13,10 @@
 
 import functools
 import warnings
+from collections.abc import Sequence
 from copy import deepcopy
 from typing import Any
 
-from collections.abc import Sequence
-
 import numpy as np
 import torch
 

monai/engines/evaluator.py

@@ -12,9 +12,8 @@
 from __future__ import annotations
 
 import warnings
-from typing import TYPE_CHECKING, Any, Callable
-
 from collections.abc import Iterable, Sequence
+from typing import TYPE_CHECKING, Any, Callable
 
 import torch
 from torch.utils.data import DataLoader

monai/engines/trainer.py

@@ -12,9 +12,8 @@
 from __future__ import annotations
 
 import warnings
-from typing import TYPE_CHECKING, Any, Callable
-
 from collections.abc import Iterable, Sequence
+from typing import TYPE_CHECKING, Any, Callable
 
 import torch
 from torch.optim.optimizer import Optimizer

monai/engines/utils.py

@@ -12,11 +12,9 @@
 from __future__ import annotations
 
 from abc import ABC, abstractmethod
-from collections.abc import Callable, Sequence
+from collections.abc import Callable, Mapping, Sequence
 from typing import TYPE_CHECKING, Any, cast
 
-from collections.abc import Mapping
-
 import torch
 import torch.nn as nn
 

monai/handlers/clearml_handlers.py

@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import TYPE_CHECKING, Any
-
 from collections.abc import Mapping, Sequence
+from typing import TYPE_CHECKING, Any
 
 from monai.utils import optional_import
 

monai/inferers/utils.py

@@ -12,11 +12,9 @@
 from __future__ import annotations
 
 import itertools
-from collections.abc import Callable, Mapping, Sequence
+from collections.abc import Callable, Iterable, Mapping, Sequence
 from typing import Any
 
-from collections.abc import Iterable
-
 import numpy as np
 import torch
 import torch.nn.functional as F

monai/metrics/utils.py

@@ -12,12 +12,11 @@
 from __future__ import annotations
 
 import warnings
+from collections.abc import Iterable, Sequence
 from functools import lru_cache, partial
 from types import ModuleType
 from typing import Any
 
-from collections.abc import Iterable, Sequence
-
 import numpy as np
 import torch
 

monai/networks/nets/swin_unetr.py

@@ -13,14 +13,14 @@
 
 import itertools
 from collections.abc import Sequence
+from typing import Final
 
 import numpy as np
 import torch
 import torch.nn as nn
 import torch.nn.functional as F
 import torch.utils.checkpoint as checkpoint
 from torch.nn import LayerNorm
-from typing import Final
 
 from monai.networks.blocks import MLPBlock as Mlp
 from monai.networks.blocks import PatchEmbed, UnetOutBlock, UnetrBasicBlock, UnetrUpBlock

monai/transforms/intensity/dictionary.py

@@ -17,9 +17,8 @@
 
 from __future__ import annotations
 
-from typing import Callable
-
 from collections.abc import Hashable, Mapping, Sequence
+from typing import Callable
 
 import numpy as np
 

monai/transforms/lazy/functional.py

@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import Any
-
 from collections.abc import Mapping, Sequence
+from typing import Any
 
 import torch
 

monai/transforms/spatial/array.py

@@ -15,13 +15,11 @@
 from __future__ import annotations
 
 import warnings
-from collections.abc import Callable
+from collections.abc import Callable, Sequence
 from copy import deepcopy
 from itertools import zip_longest
 from typing import Any, Optional, Union, cast
 
-from collections.abc import Sequence
-
 import numpy as np
 import torch
 

monai/transforms/utility/dictionary.py

@@ -18,12 +18,10 @@
 from __future__ import annotations
 
 import re
-from collections.abc import Callable, Hashable, Mapping
+from collections.abc import Callable, Hashable, Mapping, Sequence
 from copy import deepcopy
 from typing import Any, cast
 
-from collections.abc import Sequence
-
 import numpy as np
 import torch
 

monai/utils/component_store.py

@@ -12,12 +12,11 @@
 from __future__ import annotations
 
 from collections import namedtuple
+from collections.abc import Iterable
 from keyword import iskeyword
 from textwrap import dedent, indent
 from typing import Any, Callable, TypeVar
 
-from collections.abc import Iterable
-
 T = TypeVar("T")
 
 

monai/utils/decorators.py

@@ -15,9 +15,8 @@
 
 __all__ = ["RestartGenerator", "MethodReplacer"]
 
-from typing import Callable
-
 from collections.abc import Generator
+from typing import Callable
 
 
 class RestartGenerator:

monai/utils/dist.py

@@ -14,10 +14,7 @@
 import warnings
 from collections.abc import Callable
 from logging import Filter
-
-from typing import Literal
-
-from typing import overload
+from typing import Literal, overload
 
 import torch
 import torch.distributed as dist

monai/utils/module.py

@@ -18,7 +18,7 @@
 import re
 import sys
 import warnings
-from collections.abc import Callable, Collection, Hashable, Mapping
+from collections.abc import Callable, Collection, Hashable, Iterable, Mapping
 from functools import partial, wraps
 from importlib import import_module
 from pkgutil import walk_packages
@@ -27,8 +27,6 @@
 from types import FunctionType, ModuleType
 from typing import Any, cast
 
-from collections.abc import Iterable
-
 import torch
 
 # bundle config system flags

monai/utils/state_cacher.py

@@ -15,11 +15,10 @@
 import os
 import pickle
 import tempfile
+from collections.abc import Hashable
 from types import ModuleType
 from typing import Any
 
-from collections.abc import Hashable
-
 import torch
 from torch.serialization import DEFAULT_PROTOCOL
 

tests/test_dynunet.py

@@ -13,9 +13,8 @@
 
 import platform
 import unittest
-from typing import Any
-
 from collections.abc import Sequence
+from typing import Any
 
 import torch
 from parameterized import parameterized

tests/test_network_consistency.py

@@ -14,8 +14,8 @@
 import json
 import os
 import unittest
-from glob import glob
 from collections.abc import Sequence
+from glob import glob
 from unittest.case import skipIf
 
 import torch