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Using LocalStore in Zarr v3 (#8299)
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Fixes #8298 


### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <[email protected]>
Co-authored-by: Eric Kerfoot <[email protected]>
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KumoLiu and ericspod authored Jan 15, 2025
1 parent eaa901c commit 56d1f62
Showing 1 changed file with 9 additions and 2 deletions.
11 changes: 9 additions & 2 deletions tests/test_zarr_avg_merger.py
Original file line number Diff line number Diff line change
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from torch.nn.functional import pad

from monai.inferers import ZarrAvgMerger
from monai.utils import optional_import
from monai.utils import get_package_version, optional_import, version_geq
from tests.utils import assert_allclose

np.seterr(divide="ignore", invalid="ignore")
zarr, has_zarr = optional_import("zarr")
if has_zarr:
if version_geq(get_package_version("zarr"), "3.0.0"):
directory_store = zarr.storage.LocalStore("test.zarr")
else:
directory_store = zarr.storage.DirectoryStore("test.zarr")
else:
directory_store = None
numcodecs, has_numcodecs = optional_import("numcodecs")

TENSOR_4x4 = torch.randint(low=0, high=255, size=(2, 3, 4, 4), dtype=torch.float32)
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# explicit directory store
TEST_CASE_10_DIRECTORY_STORE = [
dict(merged_shape=TENSOR_4x4.shape, store=zarr.storage.DirectoryStore("test.zarr")),
dict(merged_shape=TENSOR_4x4.shape, store=directory_store),
[
(TENSOR_4x4[..., :2, :2], (0, 0)),
(TENSOR_4x4[..., :2, 2:], (0, 2)),
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