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fix: CHANGELOG
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ambarrio committed Feb 9, 2024
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Showing 1 changed file with 7 additions and 13 deletions.
20 changes: 7 additions & 13 deletions CHANGELOG.md
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Expand Up @@ -24,28 +24,22 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### Changed

* Change name and description of `Avg. Reads per Cell` and `Avg. Reads Usable per Cell` in QC report.
* The output name of the `.pxl` file from the `annotate` step is now `*.annotated.dataset.pxl`
* The output name of the `.pxl` file from the `analysis` step is now `*.analysis.dataset.pxl`

### Removed

* Remove `--input1_pattern` and `--input2_pattern` from `single-cell amplicon` command.
* Self-correlations, e.g. CD8 vs CD8 are not longer part of the colocalization results, as these
values will always be undefined.

### Fixed

* Fix a bug in how discarded UMIs are calculated and reported.
* Fix deflated counts in the edgelist after collapse.
* Fix bug where an `r1` or `r2` in the directory part of a read file would break file
name sanity checks.

### Changed

* Change name and description of `Avg. Reads per Cell` and `Avg. Reads Usable per Cell` in QC report.

### Fixed
### Removed

* Fix a bug in how discarded UMIs are calculated and reported.
* Fix deflated counts in the edgelist after collapse.
* Remove `--input1_pattern` and `--input2_pattern` from `single-cell amplicon` command.
* Self-correlations, e.g. CD8 vs CD8 are not longer part of the colocalization results, as these
values will always be undefined.


## [0.16.1] - 2024-01-12
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