0.8.0
This is a backwards-incompatible release that will be used to postprocess the beta version of the first release of the HBCD dataset.
There are two major breaking changes.
First, there is a new required --mode
parameter that automatically defines sets of parameters to match recommendations from different studies/labs.
Each parameter that the --mode
parameter controls can be overridden, so users should be able to reproduce their original settings from previous versions of XCP-D.
Second, XCP-D now loads certain sphere files from the BIDS derivatives, rather than non-BIDS Freesurfer or MCRIBS folders.
This means that the anatomical workflow (--warp-surfaces-native2std
) will only work for fMRIPrep versions >= 23.1.0 and Nibabies versions >= 23.1.0.
The rest of XCP-D should still work for versions of fMRIPrep and Nibabies that were supported previously, but we cannot guarantee this.
What's Changed
🛠 Breaking Changes
- Add required
--mode
parameter to define sets of parameters by @tsalo in #1109 - Load spheres for anatomical workflow from TemplateFlow and BIDS derivatives by @tsalo in #1207
🎉 Exciting New Features
- Add discretized MID-B and Myers-Labonte atlases by @tsalo in #1192
- Plot CIFTI maps on subject-specific surfaces when available by @tsalo in #1208
- Allow bids-filter-file terms for mesh and morphometry files by @tsalo in #1210
🐛 Bug Fixes
- Generate session-wise executive summaries by @tsalo in #1202
- Look for space entity in T2w-only anatomical inputs by @tsalo in #1203
- Use standard-space anatomical brain mask by @tsalo in #1204
- Drop volumetric Myers-Labonte atlas by @tsalo in #1212
- Enable linc-qc for abcd and hbcd modes by default by @tsalo in #1220
Other Changes
- Document anatomical workflow in more detail by @tsalo in #1191
- Fix up documentation by @tsalo in #1209
- Reorganize QC interfaces by @tsalo in #1215
- Allow
space-fsaverage
for sphere files by @tsalo in #1217 - Continue to improve documentation of anatomical workflow by @tsalo in #1216
Full Changelog: 0.7.5...0.8.0