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@tsalo tsalo released this 31 Jul 17:33
· 113 commits to main since this release
14de282

This is a backwards-incompatible release that will be used to postprocess the beta version of the first release of the HBCD dataset.
There are two major breaking changes.
First, there is a new required --mode parameter that automatically defines sets of parameters to match recommendations from different studies/labs.
Each parameter that the --mode parameter controls can be overridden, so users should be able to reproduce their original settings from previous versions of XCP-D.
Second, XCP-D now loads certain sphere files from the BIDS derivatives, rather than non-BIDS Freesurfer or MCRIBS folders.
This means that the anatomical workflow (--warp-surfaces-native2std) will only work for fMRIPrep versions >= 23.1.0 and Nibabies versions >= 23.1.0.
The rest of XCP-D should still work for versions of fMRIPrep and Nibabies that were supported previously, but we cannot guarantee this.

What's Changed

🛠 Breaking Changes

  • Add required --mode parameter to define sets of parameters by @tsalo in #1109
  • Load spheres for anatomical workflow from TemplateFlow and BIDS derivatives by @tsalo in #1207

🎉 Exciting New Features

  • Add discretized MID-B and Myers-Labonte atlases by @tsalo in #1192
  • Plot CIFTI maps on subject-specific surfaces when available by @tsalo in #1208
  • Allow bids-filter-file terms for mesh and morphometry files by @tsalo in #1210

🐛 Bug Fixes

  • Generate session-wise executive summaries by @tsalo in #1202
  • Look for space entity in T2w-only anatomical inputs by @tsalo in #1203
  • Use standard-space anatomical brain mask by @tsalo in #1204
  • Drop volumetric Myers-Labonte atlas by @tsalo in #1212
  • Enable linc-qc for abcd and hbcd modes by default by @tsalo in #1220

Other Changes

  • Document anatomical workflow in more detail by @tsalo in #1191
  • Fix up documentation by @tsalo in #1209
  • Reorganize QC interfaces by @tsalo in #1215
  • Allow space-fsaverage for sphere files by @tsalo in #1217
  • Continue to improve documentation of anatomical workflow by @tsalo in #1216

Full Changelog: 0.7.5...0.8.0