Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[FIX] Fix validator for unzipped input datasets: considering folders not in patterns of sub-* #143

Merged
merged 1 commit into from
Sep 28, 2023
Merged

[FIX] Fix validator for unzipped input datasets: considering folders not in patterns of sub-* #143

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
15 changes: 7 additions & 8 deletions babs/utils.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -65,20 +65,19 @@ def check_validity_unzipped_input_dataset(input_ds, type_session):

for i_ds in range(0, input_ds.num_ds):
if input_ds.df["is_zipped"][i_ds] is False: # unzipped ds:
is_valid_sublevel = False

input_ds_path = input_ds.df["path_now_abs"][i_ds]
list_subs = get_immediate_subdirectories(input_ds_path)
for sub_temp in list_subs: # if one of the folder starts with "sub-", then it's fine
if sub_temp[0:4] == "sub-":
is_valid_sublevel = True
break
if not is_valid_sublevel:
# Check if there is sub-*:
full_paths = sorted(glob.glob(input_ds_path # `sorted()` is optional
+ "/sub-*"))
# only get the sub's foldername, if it's a directory:
list_subs = [op.basename(temp) for temp in full_paths if op.isdir(temp)]
if len(list_subs) == 0: # no folders with `sub-*`:
raise Exception(
"There is no `sub-*` folder in input dataset #" + str(i_ds+1)
+ " '" + input_ds.df["name"][i_ds] + "'!"
)

# For multi-ses: also check if there is session in each sub-*:
if type_session == "multi-ses":
for sub_temp in list_subs: # every sub- folder should contain a session folder
if sub_temp[0] == ".": # hidden folder
Expand Down