Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[DOC] add guides in eg walkthrough: if there is no internet on compute nodes #121

Merged
merged 1 commit into from
Jul 19, 2023

Conversation

zhao-cy
Copy link
Collaborator

@zhao-cy zhao-cy commented Jul 19, 2023

It seems like some clusters do not have internet connection on compute nodes. e.g., see issue #118 reported by @yibeichan. Therefore, users should get all data content of the input datasets before submitting the jobs.

@zhao-cy
Copy link
Collaborator Author

zhao-cy commented Jul 19, 2023

@yibeichan I've updated the example walkthrough by adding several drop-down boxes called If there is no Internet connection on compute nodes - see the update example walkthrough here - note: this doc is built upon a branch, not the main branch, so the link is different from the one you usually use.

If you have time, could I ask you a favor of going thru this example walkthrough on Princeton cluster, and see if this works now? I hope to make sure it's working on clusters w/o internet connections on compute node. I've tried the added commands, but the clusters I have access to all have internets, so hope to double check in the real scenario w/o internet. Would greatly appreciate it if you do so!

@zhao-cy
Copy link
Collaborator Author

zhao-cy commented Jul 19, 2023

Yibei has confirmed that what I instructed in issue #118 worked on Princeton neuroscience institute cluster - she can successfully go thru the entire example walkthrough all the way to the end, i.e., all 6 jobs successfully finished + branches were merged, and finally get the correct number from sub-01, ses-A.

@zhao-cy
Copy link
Collaborator Author

zhao-cy commented Jul 19, 2023

I am merging this to main now. Instructions to be added in other parts of the docs will be done when completing issue #115.

@zhao-cy zhao-cy changed the title [DOC] add guides: if there is no internet on compute nodes [DOC] add guides in eg walkthrough: if there is no internet on compute nodes Jul 19, 2023
@zhao-cy zhao-cy merged commit c75e58c into main Jul 19, 2023
@zhao-cy
Copy link
Collaborator Author

zhao-cy commented Jul 19, 2023

Oops, I forgot to add one minor notes in the example walkthrough. As I already merged this branch to main, I'll directly added it in the main branch.

(after datalad get *:)

You should see these printed messages from ``datalad`` at the end:

    .. code-block:: console

        action summary:
          get (notneeded: 1, ok: 47)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant