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@tsalo tsalo released this 28 Feb 16:24
1.2.0
b172dd3
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What's Changed

🛠 Breaking Changes

🎉 Exciting New Features

  • Provide option to run locally installed bids-validator by @gabridele in #380
  • Use BIDS schema in CuBIDS by @tsalo in #392
  • Use cluster number in non-dominant acquisition variant names by @singlesp in #432
  • Add "C" prefix to cluster values in variants by @tsalo in #438
  • Bookend entity sets with datatype and acquisition entities by @tsalo in #442

🐛 Bug Fixes

  • Remove unnecessary arguments from cubids apply by @tsalo in #317
  • logger not printing metadata so use print instead by @tientong98 in #333
  • Support BIDS URIs in CuBIDS apply by @tsalo in #367
  • Stop adding leading zero to run entity when renaming files by @tsalo in #382
  • Use force_unlock in copy_exemplars Python workflow by @tsalo in #396
  • Block autocompletion of arguments in CLI by @gabridele in #393
  • Fixing bug to allow filenames in cubids apply and cubids copy-exemplars by @gabridele in #404
  • cubids print-metadata-fields exits if no dataset_desciption.json by @singlesp in #409
  • Fix: Update CuBIDS to allow both longitudinal and cross-sectional structure by adding is_longitudinal attribute to CUBIDS class by @tientong98 in #406
  • Variant renaming suggestions are ignoring tolerances by @mattcieslak in #417
  • add_nifti_info ImageOrientation 'None' in tuple fix by @ashleychari in #428
  • Pass schema along to workflows by @tsalo in #430
  • Remove non-alphanumeric characters from variant values by @tsalo in #443
  • Strip p0 from all values by @tsalo in #447

Other Changes

  • Fix test data path by @tsalo in #319
  • Add specification to use relative path for files listed in scans.txt used in cubids purge by @tientong98 in #345
  • Add --force-unlock to copy-exemplars and fix path to script in apply by @gabridele in #346
  • Delete notebooks from sidebar by @B-Sevchik in #371
  • remove links.rst from docs + add hyperlink by @shivaram-k in #373
  • Updated python versions in testing matrix by @gabridele in #374
  • Switch from using pkg_resources to importlib.resources by @singlesp in #369
  • Test CLI utils by @tsalo in #349
  • Update usage.rst to change from key group to entity set by @tientong98 in #381
  • Fill in docstrings for functions in config.py and tests/utils.py by @singlesp in #377
  • Cleanup notebooks by @smeisler in #366
  • Add module docstrings for about.py, init.py, constants.py, and utils.py by @singlesp in #398
  • Add docstrings for cubids/cli.py by @singlesp in #391
  • Update docstrings for files in cubids/tests by @shivaram-k in #397
  • Avoid copying shell prompt $ when copying example commands from docs by @gabridele in #402
  • Updated docs explaining the installation for internetless use cases by @gabridele in #401
  • add/edit docstrings for metadata_merge.py and validator.py by @singlesp in #408
  • Update installation instructions to use miniforge by @B-Sevchik in #375
  • Add FAQ page by @tsalo in #388
  • Make Tien the development lead and add code sprint participants to contributor list by @tsalo in #361
  • Switch from conda to mamba in CircleCI tests by @tsalo in #416
  • Add/edit cubids.py docstrings by @singlesp in #411
  • Split out non-class methods into utils module by @tsalo in #419
  • Clarify handling of non-BIDS entities in entity sets (e.g., fmap-epi) by @tsalo in #435
  • Fix NaN Handling during Clustering by @tientong98 in #439
  • Improve testing of command-line interfaces by @tsalo in #431

New Contributors

Full Changelog: 1.1.0...1.2.0

Contributors

mattcieslak, tsalo, and 7 other contributors
Assets 2
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