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Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data
FLIMPA: An open-sourced software for phasor plot analyis of TCSPC-FLIM data
Pretraining a foundation model for generalizable fluorescence microscopy-based image restoration
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
User-affordable and versatile light-sheet microscopy system for cleared specimens
SPIMlab is a data acquisition and control software for Light Sheet Microscopy
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher
Deconvolution of widefield microscopy images and generation of point spread functions
Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with outputs of any 2D segmentation method.
A napari plugin to process and analyse images with chatGPT!
A flexible SIM reconstruction method capable to handle difficult data prone to reconstruction artifacts.
A platform for compiling, analyzing, and exploring tracking data
Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop between April and July 2024
Protocol for setting up an automated 3D and multi-colour single-molecule microscope
Basic digital image design, processing, analysis, management, and presentation - datasets and code
Hardware documentation for mesoSPIM-Bechtop microscope project
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Accurate and efficient spot detection for microscopy data
Napari plugin automating structured illumination microscopy (SIM) reconstruction and diagnostics from the mcSIM package