Added linters to the pull request GitHub action workflows #9
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WalkthroughThis pull request introduces comprehensive configuration and workflow enhancements for a Python project. The changes focus on improving code quality, documentation standards, and automated checks. New configuration files for linting tools like flake8 and pydocstyle are added, along with a sophisticated GitHub Actions workflow that includes docstring validation, code quality checks, and CodeRabbit.ai approval verification. A custom docstring checking script is introduced to enforce documentation standards, and the requirements.txt is expanded with additional dependencies to support these new processes. Changes
Sequence DiagramsequenceDiagram
participant PR as Pull Request
participant GHA as GitHub Actions
participant QC as Code Quality Checks
participant DC as Docstring Compliance
participant CR as CodeRabbit Validation
PR->>GHA: Trigger Workflow
GHA->>QC: Run Linting and Formatting
QC-->>GHA: Quality Check Results
GHA->>DC: Check Docstring Compliance
DC-->>GHA: Docstring Validation
GHA->>CR: Validate CodeRabbit Approval
CR-->>GHA: Approval Status
GHA->>PR: Workflow Complete
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Our Pull Request Approval ProcessWe have these basic policies to make the approval process smoother for our volunteer team. Testing Your CodePlease make sure your code passes all tests and there are no merge conflicts. The process helps maintain accurate and well-formatted documentation and is a prerequisite for getting your PR approved. Assigned reviewers regularly review the PR queue and tend to focus on PRs that are passing. ReviewersWhen your PR has been assigned reviewers contact them to get your code reviewed and approved via:
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Actionable comments posted: 7
🧹 Nitpick comments (7)
.github/workflows/scripts/check_docstrings.py (3)
29-35: Use specific exception handling when opening filesCatching a broad
Exceptioncan mask unexpected errors and make debugging more difficult. It's better to catch specific exceptions, such asFileNotFoundError.Apply this diff to handle specific exceptions:
try: with open(file_path, "r", encoding="utf-8") as fh_: lines_with_hard_returns = fh_.readlines() -except Exception: +except FileNotFoundError: return violations🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
53-54: Combine nested if statements into a single conditionThe nested
ifstatements at lines 53-54 can be combined into a single condition for better readability.Apply this diff:
if bool(decorator): - if decorator_in_docstring_exception_list(decorator): + if decorator_in_docstring_exception_list(decorator): continueOr combine both conditions:
-if bool(decorator): - if decorator_in_docstring_exception_list(decorator): +if decorator and decorator_in_docstring_exception_list(decorator): continue🧰 Tools
🪛 Ruff (0.8.2)
53-54: Use a single
ifstatement instead of nestedifstatements(SIM102)
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
352-365: Use specific exception handling when parsing docstringsCatching a broad
Exceptioncan mask parsing errors. It's better to catch specific exceptions likeParseErrorfromdocstring_parser.Apply this diff:
try: parser = parse(docstring) -except Exception as e: +except ParseError as e: violations.append( Violation( line=docstring_start,🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
.github/workflows/scripts/validate-coderabbit.sh (2)
5-9: Enhance the curl command with proper quotingThe curl command should use proper quoting to handle special characters in variables safely.
Apply this diff:
-response=$(curl -s -f -H "Authorization: token $GITHUB_TOKEN" \ - "https://api.github.com/repos/${GITHUB_REPOSITORY}/pulls/${PR_NUMBER}/reviews?per_page=1000") || { +response=$(curl -s -f -H "Authorization: token ${GITHUB_TOKEN}" \ + "https://api.github.com/repos/${GITHUB_REPOSITORY}/pulls/${PR_NUMBER}/reviews?per_page=1000" 2>&1) || { echo "Error: Failed to fetch reviews from GitHub API" + echo "Details: $response" exit 1 }🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
11-19: Enhance error handling for JSON processingThe error handling could provide more context about the failure.
Apply this diff:
latest_reviews=$(echo "$response" | jq -c '[.[]] | group_by(.user.login) | map(max_by(.submitted_at))') || { - echo "Error: Failed to process reviews JSON" + echo "Error: Failed to process reviews JSON. Response was:" + echo "$response" | jq '.' exit 1 } if [ "$latest_reviews" = "null" ] || [ -z "$latest_reviews" ]; then - echo "Error: Invalid reviews data" + echo "Error: No reviews found or invalid reviews data" exit 1 fi🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
.gitignore (1)
26-34: Consider uncommenting VS Code settingsThe commented VS Code settings could be useful for maintaining consistent editor configurations across the team.
Consider uncommenting these lines if you want to maintain consistent VS Code settings:
-#!.vscode/settings.json -#!.vscode/tasks.json -#!.vscode/launch.json -#!.vscode/extensions.json -#!.vscode/*.code-snippets +!.vscode/settings.json +!.vscode/tasks.json +!.vscode/launch.json +!.vscode/extensions.json +!.vscode/*.code-snippets🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
.github/workflows/pull-request.yml (1)
220-221: Fix trailing whitespaceRemove trailing whitespace to fix yamllint error.
Apply this diff:
- GITHUB_REPOSITORY: ${{ github.repository }} - + GITHUB_REPOSITORY: ${{ github.repository }}🧰 Tools
🪛 yamllint (1.35.1)
[error] 221-221: trailing spaces
(trailing-spaces)
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
📜 Review details
Configuration used: .coderabbit.yaml
Review profile: CHILL
Plan: Pro
📒 Files selected for processing (8)
.flake8(1 hunks).github/workflows/pull-request.yml(2 hunks).github/workflows/scripts/check_docstrings.py(1 hunks).github/workflows/scripts/validate-coderabbit.sh(1 hunks).gitignore(1 hunks).pydocstyle(1 hunks)pyproject.toml(1 hunks)requirements.txt(1 hunks)
✅ Files skipped from review due to trivial changes (2)
- pyproject.toml
- .flake8
🧰 Additional context used
🪛 GitHub Actions: PR Workflow
.pydocstyle
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
.gitignore
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
.github/workflows/scripts/validate-coderabbit.sh
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
.github/workflows/pull-request.yml
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
requirements.txt
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
.github/workflows/scripts/check_docstrings.py
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
🪛 actionlint (1.7.4)
.github/workflows/pull-request.yml
214-214: shellcheck reported issue in this script: SC2086:info:1:10: Double quote to prevent globbing and word splitting
(shellcheck)
214-214: shellcheck reported issue in this script: SC2086:info:2:1: Double quote to prevent globbing and word splitting
(shellcheck)
233-233: the runner of "actions/setup-python@v4" action is too old to run on GitHub Actions. update the action's version to fix this issue
(action)
🪛 yamllint (1.35.1)
.github/workflows/pull-request.yml
[error] 221-221: trailing spaces
(trailing-spaces)
🪛 Ruff (0.8.2)
.github/workflows/scripts/check_docstrings.py
53-54: Use a single if statement instead of nested if statements
(SIM102)
138-138: Loop control variable argument_function not used within loop body
(B007)
162-162: Loop control variable argument_docstring not used within loop body
(B007)
🔇 Additional comments (2)
.pydocstyle (1)
1-3:⚠️ Potential issueEnsure configuration files are recognized by tools
The pipeline is failing with errors indicating missing configuration files. Tools like
pydocstyleoften expect configurations in files liketox.ini,setup.cfg, orpyproject.toml.Consider moving the
pydocstyleconfiguration into an appropriate file, such assetup.cfg, to ensure the tool recognizes it.🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
requirements.txt (1)
32-36:⚠️ Potential issueVerify flake8 configuration to fix pipeline errors
The pipeline error indicates that the environment 'flake8' is not found in the configuration file. Ensure that
flake8is properly configured in a recognized configuration file liketox.ini,setup.cfg, orpyproject.toml.Consider adding a
setup.cfgfile with the following content:[flake8] max-line-length = 88 extend-ignore = E203, W503This will help
flake8recognize the configuration and resolve the pipeline error.🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
| def extract_function_arguments(start, lines): | ||
| """Extract the arguments of a function read from a file. | ||
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| Args: | ||
| start: Starting line to process | ||
| lines: List of lines in the file | ||
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| Returns: | ||
| result: Function object | ||
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| """ | ||
| # Initialize key variables | ||
| func = "" | ||
| possibles = lines[start:] | ||
| arguments = [] | ||
| Function = namedtuple("Function", "name arguments") | ||
| method_keywords = ["self", "cls"] | ||
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| # Process the function | ||
| for line in possibles: | ||
| if bool(line) is False: | ||
| continue | ||
| elif ("'''" not in line) and ('"""' not in line): | ||
| func = f"{func}{line.strip()}" | ||
| else: | ||
| break | ||
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| # Get the arguments | ||
| items = func.split("(")[1].split(",") | ||
| name = func.split()[1].split("(")[0].strip() | ||
| for item in items: | ||
| result = item.split(")")[0].split("=")[0].strip() | ||
| if bool(result): | ||
| arguments.append(result) | ||
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| # Fix arguments for methods | ||
| for keyword in method_keywords: | ||
| if keyword in arguments: | ||
| arguments.remove(keyword) | ||
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| # Return | ||
| result = Function(name=name, arguments=arguments) | ||
| return result | ||
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There was a problem hiding this comment.
🛠️ Refactor suggestion
Use the ast module to parse function arguments
The extract_function_arguments function uses string manipulation to parse function definitions, which can be fragile and error-prone. Using the ast module provides a more robust solution.
Consider refactoring the function to utilize the ast module:
import ast
def extract_function_arguments(file_content):
"""Extract functions and their arguments using the ast module."""
Function = namedtuple("Function", "name arguments")
functions = []
tree = ast.parse(file_content)
for node in ast.walk(tree):
if isinstance(node, (ast.FunctionDef, ast.AsyncFunctionDef)):
func_name = node.name
arguments = [arg.arg for arg in node.args.args if arg.arg not in ("self", "cls")]
functions.append(Function(name=func_name, arguments=arguments))
return functions🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
| for argument_docstring in arguments_docstring: | ||
| # Track whether the argument is defined | ||
| # in the function parameters | ||
| for argument_function in arguments_function: | ||
| if argument_function not in arguments_docstring: | ||
| violations.append( | ||
| Violation( | ||
| line=line_number + 1, | ||
| function=function.name, | ||
| issue=f"""\ | ||
| Argument '{argument_function}' defined in the function is not \ | ||
| an argument in the docstring""", | ||
| action=f"""\ | ||
| Add argument '{argument_function}' to the Docstring""", | ||
| ) | ||
| ) | ||
| bad_argument_docstring = True | ||
| break | ||
| if bad_argument_docstring: | ||
| break | ||
|
|
There was a problem hiding this comment.
🛠️ Refactor suggestion
Remove unused loop variable or refactor loop
Similarly, the loop variable argument_docstring at line 162 is not used within the loop body.
Refactor the code to address this issue.
Apply this diff:
-for argument_docstring in arguments_docstring:
# Track whether the argument is defined
# in the function parameters
for argument_function in arguments_function:
if argument_function not in arguments_docstring:Committable suggestion skipped: line range outside the PR's diff.
🧰 Tools
🪛 Ruff (0.8.2)
162-162: Loop control variable argument_docstring not used within loop body
(B007)
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
| for argument_function in arguments_function: | ||
| # Track whether the argument is defined | ||
| # in the docstring parameters | ||
| for argument_docstring in arguments_docstring: | ||
| if argument_docstring not in arguments_function: | ||
| violations.append( | ||
| Violation( | ||
| line=line_number + 1, | ||
| function=function.name, | ||
| issue=f"""\ | ||
| Argument '{argument_docstring}' defined in the docstring is not \ | ||
| an argument in the function""", | ||
| action=f"""\ | ||
| Remove argument '{argument_docstring}' from the docstring""", | ||
| ) | ||
| ) | ||
| bad_argument_function = True | ||
| break | ||
| if bad_argument_function: | ||
| break | ||
|
|
There was a problem hiding this comment.
🛠️ Refactor suggestion
Remove unused loop variable or refactor loop
The loop variable argument_function at line 138 is not used within the loop body, which may indicate an issue with the loop's logic.
Consider refactoring the code to eliminate the unnecessary loop or correct the variable usage.
Apply this diff to fix the issue:
-for argument_function in arguments_function:
# Track whether the argument is defined
# in the docstring parameters
for argument_docstring in arguments_docstring:
if argument_docstring not in arguments_function:Committable suggestion skipped: line range outside the PR's diff.
🧰 Tools
🪛 Ruff (0.8.2)
138-138: Loop control variable argument_function not used within loop body
(B007)
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
| pytest | ||
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| # Docstring Parser | ||
| docstring_parser |
There was a problem hiding this comment.
Remove duplicate dependency 'docstring_parser'
The docstring_parser package is listed twice in requirements.txt at lines 26 and 36.
Apply this diff to remove the duplicate entry:
# Docstring Parser
docstring_parser
# Other
more-itertools
#Linting and formatting
flake8
flake8-docstrings
pydocstyle
black
-docstring_parserAlso applies to: 36-36
🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
| #!/bin/bash | ||
|
|
There was a problem hiding this comment.
🛠️ Refactor suggestion
Add environment variable validation
Add validation for required environment variables at the start of the script.
Add this at the beginning of the script:
#!/bin/bash
+set -e
+
+# Validate required environment variables
+for var in GITHUB_TOKEN PR_NUMBER GITHUB_REPOSITORY; do
+ if [ -z "${!var}" ]; then
+ echo "Error: Required environment variable $var is not set"
+ exit 1
+ fi
+done
+
+# Validate PR_NUMBER is a positive integer
+if ! [[ "$PR_NUMBER" =~ ^[1-9][0-9]*$ ]]; then
+ echo "Error: PR_NUMBER must be a positive integer"
+ exit 1
+fi📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| #!/bin/bash | |
| #!/bin/bash | |
| set -e | |
| # Validate required environment variables | |
| for var in GITHUB_TOKEN PR_NUMBER GITHUB_REPOSITORY; do | |
| if [ -z "${!var}" ]; then | |
| echo "Error: Required environment variable $var is not set" | |
| exit 1 | |
| fi | |
| done | |
| # Validate PR_NUMBER is a positive integer | |
| if ! [[ "$PR_NUMBER" =~ ^[1-9][0-9]*$ ]]; then | |
| echo "Error: PR_NUMBER must be a positive integer" | |
| exit 1 | |
| fi |
🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
| - name: Set up Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: 3.9 | ||
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| - name: Install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install flake8 black pydocstyle flake8-docstrings | ||
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| - name: Run Black Formatter Check | ||
| run: | | ||
| black --check . | ||
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| - name: Run Flake8 Linter | ||
| run: | | ||
| flake8 --docstring-convention google switchmap bin setup tests .github --ignore E402,E722,E203,F401,W503 | ||
|
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| - name: Run pydocstyle | ||
| run: | | ||
| pydocstyle switchmap setup bin tests --convention=google --add-ignore=D415,D205 |
There was a problem hiding this comment.
🛠️ Refactor suggestion
Consolidate linting jobs to avoid redundancy
The workflow has multiple jobs running similar checks (Python-Format-Checker, Python-Linter, and linting steps in Code-Quality-Checks).
- Remove the redundant jobs and consolidate the checks into
Code-Quality-Checks. - Create the missing configuration files to fix the pipeline failures:
Create setup.cfg:
[flake8]
max-line-length = 88
extend-ignore = E402,E722,E203,F401,W503
docstring-convention = google
[pydocstyle]
convention = google
add-ignore = D415,D205🧰 Tools
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
| - name: Set up Python 3.11 | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: 3.11 |
There was a problem hiding this comment.
🛠️ Refactor suggestion
Update actions/setup-python to v5
The workflow is using an outdated version of the setup-python action.
Apply this diff:
- - name: Set up Python 3.11
- uses: actions/setup-python@v4
+ - name: Set up Python 3.11
+ uses: actions/setup-python@v5
with:
python-version: 3.11📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.11 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 |
🧰 Tools
🪛 actionlint (1.7.4)
233-233: the runner of "actions/setup-python@v4" action is too old to run on GitHub Actions. update the action's version to fix this issue
(action)
🪛 GitHub Actions: PR Workflow
[error] Missing configuration file: No tox.ini, setup.cfg, pyproject.toml, or tox.toml found in the project root
[error] Environment 'flake8' not found in configuration file
palisadoes
merged commit d098f0f
into
PalisadoesFoundation:develop
* Added markdown files * Updated markdown (#5) * feat-UI: SM-Docs-API-website (#8) * Update pull-request.yml * Update pull-request.yml * Update pull-request.yml * Update pull-request.yml * Update pull-request.yml * Update pull-request.yml * Update pull-request.yml * Create .coderabbit.yaml * Added linters to the pull request GitHub action workflows (#9) * Added linters to the pull request GitHub action workflows * Added linters to the pull request GitHub action workflows * Fixed flake error * Fixed black error * Fixed black error v2 * Update check_docstrings.py * Json (#10) * JSON * Test * JSON --------- Co-authored-by: Karthik <[email protected]>
Added linters to the pull request GitHub action workflows
Summary by CodeRabbit
Release Notes
Code Quality
Development Workflow
Dependencies