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dweindl committed Nov 12, 2024
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2 changes: 1 addition & 1 deletion doc/conf.py
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# -- Project information -----------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information

project = 'petab-select'
project = 'PEtab Select'
copyright = '2023, The PEtab Select developers'
author = 'The PEtab Select developers'

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23 changes: 13 additions & 10 deletions doc/index.rst
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Expand Up @@ -19,22 +19,25 @@ algorithms and criteria.
Supported model selection algorithms:

* brute force
* forward selection
* backward selection
* FAMoS
* `forward selection <https://en.wikipedia.org/wiki/Stepwise_regression#Main_approaches>`_
* `backward selection <https://en.wikipedia.org/wiki/Stepwise_regression#Main_approaches>`_
* `FAMoS <https://doi.org/10.1371/journal.pcbi.1007230>`_

Supported model selection criteria:

* (corrected) Akaike Information Criterion (AIC / AICc)
* Bayesian Information Criterion (BIC)
* (`corrected <https://en.wikipedia.org/wiki/Akaike_information_criterion#Modification_for_small_sample_size>`_)
`Akaike Information Criterion <https://en.wikipedia.org/wiki/Akaike_information_criterion#Definition>`_ (AIC / AICc)
* `Bayesian Information Criterion <https://en.wikipedia.org/wiki/Bayesian_information_criterion#Definition>`_ (BIC)

Model calibration is performed outside of PEtab Select. For example,
PEtab Select is well-integrated with
PEtab Select is well-integrated with:

* `BasiCO <https://basico.readthedocs.io/>`_ (`example <https://basico.readthedocs.io/en/latest/notebooks/Working_with_PEtab.html#Model-Selection>`_)
* `PEtab.jl <https://sebapersson.github.io/PEtab.jl>`_ (`example <https://sebapersson.github.io/PEtab.jl/stable/pest_select/>`_)
* `BasiCO <https://basico.readthedocs.io/>`_
(`example <https://basico.readthedocs.io/en/latest/notebooks/Working_with_PEtab.html#Model-Selection>`_)
* `PEtab.jl <https://sebapersson.github.io/PEtab.jl>`_
(`example <https://sebapersson.github.io/PEtab.jl/stable/pest_select/>`_)
* `pyPESTO <https://pypesto.readthedocs.io/>`_
(`example <https://pypesto.readthedocs.io/en/latest/example/model_selection.html>`_)
(`example <https://pypesto.readthedocs.io/en/latest/example/model_selection.html>`_)

Other model calibration tools can easily be integrated using the provided
Python library or command line interface.
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------------

The Python 3 package provides both the Python 3 and command-line (CLI)
interfaces, and can be installed from PyPI, with
interfaces, and can be installed from PyPI, with:

.. code-block:: bash
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