Move majority of pylint disable from pyproject.toml to the files they…

… apply to.

l2gv2/clustering.py

@@ -1,3 +1,6 @@
+# pylint: disable=too-many-locals
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 """Graph clustering algorithms"""
 
 from math import log

l2gv2/embedding/dgi/layers/discriminator.py

@@ -1,3 +1,6 @@
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
+
 """TODO: module docstring for dgi/layers/discriminator.py."""
 
 import torch

l2gv2/embedding/dgi/models/dgi.py

@@ -1,3 +1,5 @@
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 """TODO: module docstring for dgi/models/dgi.py."""
 
 from torch import nn

l2gv2/embedding/gae/layers/GAEconv.py

@@ -18,6 +18,8 @@
 #  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 #  SOFTWARE.
 # pylint: disable=invalid-name
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 """TODO: module docstring for embedding/gae/layers/GAEconv.py."""
 
 import torch

l2gv2/embedding/gae/layers/VGAEconv.py

@@ -18,6 +18,8 @@
 #  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 #  SOFTWARE.
 # pylint: disable=invalid-name
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 """TODO: module docstring for embedding/gae/layers/VGAEconv.py."""
 
 import torch

l2gv2/embedding/svd.py

@@ -17,9 +17,13 @@
 #  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 #  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 #  SOFTWARE.
-"""TODO: module docstring for embedding/svd.py"""
 
 # pylint: disable=invalid-name
+# pylint: disable=too-many-locals
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
+"""TODO: module docstring for embedding/svd.py"""
+
 import scipy.sparse as ss
 import scipy.sparse.linalg as sl
 import numpy as np

l2gv2/embedding/train.py

@@ -17,6 +17,9 @@
 #  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 #  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 #  SOFTWARE.
+
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 """TODO: module docstring for embedding/train.py."""
 
 import torch

l2gv2/example.py

@@ -1,3 +1,6 @@
+# pylint: disable=too-many-locals
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 """Generate synthetic test data."""
 
 import argparse

l2gv2/manopt_optimization.py

@@ -1,3 +1,6 @@
+# pylint: disable=too-many-locals
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 """Module with functions for the optimization of the
 embeddings of the patches using the manopt library."""
 

l2gv2/models.py

@@ -1,3 +1,6 @@
+# pylint: disable=too-many-locals
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 """This module contains the functions to compute the
 embeddings of a list of patches using VGAE and Node2Vec."""
 

l2gv2/network/graph.py

@@ -17,6 +17,9 @@
 #  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 #  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 #  SOFTWARE.
+
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 """TODO: module docstring for network/graph.py"""
 
 from typing import Sequence, Iterable

l2gv2/network/utils.py

@@ -1,5 +1,3 @@
-"""Graph data handling"""
-
 #  Copyright (c) 2021. Lucas G. S. Jeub
 #
 #  Permission is hereby granted, free of charge, to any person obtaining a copy
@@ -20,6 +18,11 @@
 #  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 #  SOFTWARE.
 
+# pylint: disable=too-many-locals
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
+"""Graph data handling"""
+
 import torch
 import numpy as np
 import numba

l2gv2/patch/patch.py

@@ -17,6 +17,9 @@
 #  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 #  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 #  SOFTWARE.
+
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 """TODO: module docstring"""
 
 import copy

l2gv2/patch/patches.py

@@ -1,3 +1,7 @@
+# pylint: disable=too-many-locals
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
+
 """Dividing input data into overlapping patches"""
 
 from random import choice

l2gv2/patch/utils.py

@@ -19,6 +19,9 @@
 #  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 #  SOFTWARE.
 
+# pylint: disable=too-many-locals
+# pylint: disable=too-many-arguments
+# pylint: disable=too-many-positional-arguments
 from pathlib import Path
 import json
 import copy

l2gv2/sparsify.py

@@ -1,3 +1,4 @@
+# pylint: disable=too-many-locals
 """Graph sparsification"""
 # pylint: disable=invalid-name
 

pyproject.toml

@@ -74,9 +74,6 @@ disable = [
     "fixme",
     "import-error",
     "duplicate-code",
-    "too-many-locals",
-    "too-many-arguments",
-    "too-many-positional-arguments"
 ]
 
 # pyright