Merge pull request #257 from OpenTreeOfLife/pycharm-inspections

Pycharm inspections
OpenTreeOfLife · Aug 2, 2023 · f867d09 · f867d09
2 parents 246977a + 31adaa4
commit f867d09
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Showing 29 changed files with 1,889 additions and 2,638 deletions.
diff --git a/phylesystem_api/phylesystem_api/__init__.py b/phylesystem_api/phylesystem_api/__init__.py
@@ -1,5 +1,5 @@
 from pyramid.config import Configurator
-from .api_utils import get_conf_object, get_phylesystem
+from .api_utils import get_conf_object, get_docstore_from_type
 
 
 def main(global_config, **settings):
@@ -14,5 +14,5 @@ def main(global_config, **settings):
     #     print("{k}: {v}".format(k=k, v=repr(v)))
     localconfig_filename = settings["config_file_path"]
     conf_obj = get_conf_object(localconfig_filename=localconfig_filename)
-    _ps = get_phylesystem(request=None, conf_obj=conf_obj)
+    _ps = get_docstore_from_type("study", request=None, conf_obj=conf_obj)
     return config.make_wsgi_app()