Merge version 2.0.0 for release

* develop: (24 commits)
  Fix typo
  Prepare for release
  Update docs with upgrade info.
  Test Python 3.11 compatibility.
  Update changelog with constructor update.
  Feature/95 provider super (#96)
  Remove nose.collector
  Stop building universal wheels.
  Update HISTORY
  Upgrade requirements + sqlachemy 2.0 prep (#94)
  Update HISTORY
  Change concept.concept_id from int to str. (#91)
  Update HISTORY.
  Drop pyup config file. (#92)
  Project housekeeping.
  Add HISTORY entry for 1.0.0. Fixes #89
  Update setup.py
  Drop python 3.6 and 3.7. Add python 3.9 and 3.10. (#93)
  Remove Scrutinizer.
  Add Scrutinizer config.
  ...

.travis.yml

@@ -1,15 +1,18 @@
 language: python
-sudo: false
+os: linux
+dist: bionic
 python:
- - "3.6"
- - "3.7"
  - "3.8"
+ - "3.9"
+ - "3.10"
+ - "3.11"
 services:
  - postgresql
 env:
  - DB="sqlite" SAURL="sqlite:///:memory:"
  - DB="postgres" SAURL="postgresql://postgres:postgres@localhost/skosprovider_sqlalchemy"
 install:
+ - pip install --upgrade pip setuptools importlib-metadata
  - pip install -r requirements-dev.txt
  - python setup.py -q develop
 before_script:

CITATION.cff

@@ -10,6 +10,10 @@ authors:
     email: [email protected]
     affiliation: Flanders Heritage Agency
     orcid: 'https://orcid.org/0000-0002-8153-2978'
+  - given-names: Bart
+    family-names: Saelen
+  - given-names: Wim
+    family-names: De Clercq
 abstract: >-
     A SQLAlchemy implementation of the Skosprovider interface. It allows
     storing and querying a SKOS vocabulary in a SQL database.
@@ -20,5 +24,5 @@ keywords:
   - python
   - sqlalchemy
 license: MIT
-version: 1.0.0
-date-released: "2021-12-12"
+version: 2.0.0
+date-released: "2023-01-19"

HISTORY.rst

@@ -1,3 +1,24 @@
+2.0.0 (2023-01-19)
+------------------
+
+* **Major BC break**: Change concept.concept_id from Integer to String to allow 
+  storing concepts and collections with a non-numeric id. Existing instance will 
+  need to update their SQL database. Please consult the docs or the README for 
+  some help in doing so. (#87)
+* Skosprovider_sqlalchemy now depends on SQLAlchemy 1.4 or higher and should be 
+  compatible with SQLAlchemy 2. Older versions of SQLAlchemy are no longer 
+  supported. (#90)
+* Refactored the Skosprovider_sqlalchemy constructor to call the super constructor. (#95)
+* Drop support for Python 3.6 and 3.7. Add support for Python 3.11. (#86)
+* Drop pyup support. (#85)
+
+1.0.0 (2021-12-21)
+-------------------
+
+* Drop python 2 support (#80)
+* Upgrade requirements (#78)
+* Add a CITATION.cff file
+
 0.6.0 (2020-07-29)
 ------------------
 

LICENSE

@@ -1,4 +1,4 @@
-Copyright (c) 2013-2015 Koen Van Daele
+Copyright (c) 2013-2023 Flanders Heritage Agency
 
 Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
 

README.rst

@@ -8,12 +8,21 @@ A SQLAlchemy implementation of the skosprovider_ interface.
 .. image:: https://readthedocs.org/projects/skosprovider_sqlalchemy/badge/?version=latest
         :target: https://readthedocs.org/projects/skosprovider_sqlalchemy/?badge=latest
 
-.. image:: https://travis-ci.org/koenedaele/skosprovider_sqlalchemy.png?branch=master
-        :target: https://travis-ci.org/koenedaele/skosprovider_sqlalchemy
+.. image:: https://app.travis-ci.com/OnroerendErfgoed/skosprovider_sqlalchemy.svg?branch=develop
+        :target: https://app.travis-ci.com/OnroerendErfgoed/skosprovider_sqlalchemy
 .. image:: https://img.shields.io/coveralls/koenedaele/skosprovider_sqlalchemy.svg
         :target: https://coveralls.io/r/koenedaele/skosprovider_sqlalchemy
-.. image:: https://scrutinizer-ci.com/g/koenedaele/skosprovider_sqlalchemy/badges/quality-score.png?b=master
-        :target: https://scrutinizer-ci.com/g/koenedaele/skosprovider_sqlalchemy/?branch=master
+
+
+Migrating to skosprovider_sqlalchemy 2.0.0
+------------------------------------------
+A change in the models has been made which requires a database upgrade.
+The "concept" table's "concept_id" column has changed from being an int to a string.
+
+Existing databases will therefor require a small change to update table scheme.
+Typically this will look like::
+
+    ALTER TABLE concept ALTER COLUMN concept_id TEXT NOT NULL;
 
 
 Building the docs

docs/conf.py

@@ -38,16 +38,16 @@
 
 # General information about the project.
 project = 'Skosprovider_sqlalchemy'
-copyright = '2013-2021, Koen Van Daele'
+copyright = '2013-2023, Flanders Heritage'
 
 # The version info for the project you're documenting, acts as replacement for
 # |version| and |release|, also used in various other places throughout the
 # built documents.
 #
 # The short X(.Y version.
-version = '1.0'
+version = '2.0'
 # The full version, including alpha/beta/rc tags.
-release = '1.0.0'
+release = '2.0.0'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
@@ -181,7 +181,7 @@
 # (source start file, target name, title, author, documentclass [howto/manual]).
 latex_documents = [
     ('index', 'Skosprovider_sqlalchemy.tex', 'Skosprovider\\_sqlalchemy Documentation',
-     'Koen Van Daele', 'manual'),
+     'Flanders Heritage', 'manual'),
 ]
 
 # The name of an image file (relative to this directory) to place at the top of
@@ -211,7 +211,7 @@
 # (source start file, name, description, authors, manual section).
 man_pages = [
     ('index', 'skosprovider_sqlalchemy', 'Skosprovider_sqlalchemy Documentation',
-     ['Koen Van Daele'], 1)
+     ['Flanders Heritage'], 1)
 ]
 
 # If true, show URL addresses after external links.
@@ -225,7 +225,7 @@
 #  dir menu entry, description, category)
 texinfo_documents = [
     ('index', 'Skosprovider_sqlalchemy', 'Skosprovider_sqlalchemy Documentation',
-     'Koen Van Daele', 'Skosprovider_sqlalchemy', 'One line description of project.',
+     'Flanders Heritage', 'Skosprovider_sqlalchemy', 'One line description of project.',
      'Miscellaneous'),
 ]
 
@@ -244,8 +244,8 @@
 # Bibliographic Dublin Core info.
 epub_title = 'Skosprovider_sqlalchemy'
 epub_author = 'Koen Van Daele'
-epub_publisher = 'Koen Van Daele'
-epub_copyright = '2013, Koen Van Daele'
+epub_publisher = 'Flanders Heritage'
+epub_copyright = '2013-2023, Flanders Heritage'
 
 # The language of the text. It defaults to the language option
 # or en if the language is not set.

docs/setup.rst

@@ -54,6 +54,18 @@ Let's have a look at what this script did.
    conceptscheme                 notetype                    
    conceptscheme_label           visitation     
 
+
+Upgrading from skosprovider_sqlalchemy 1.x to 2.x
+=================================================
+
+A change in the models has been made which requires a database upgrade.
+The "concept" table's "concept_id" column has changed from being an int to a string.
+
+Existing databases will therefor require a small change to update table scheme.
+Typically this will look like::
+
+    ALTER TABLE concept ALTER COLUMN concept_id TEXT NOT NULL;
+
 .. _SkosProvider: http://skosprovider.readthedocs.org
 .. _SQLAlchemy: http://docs.sqlalchemy.org/
 .. _SQLite: http://www.sqlite.org

requirements-dev.txt

@@ -2,18 +2,15 @@
 --requirement requirements.txt
 
 # Postgresql database access
-psycopg2==2.9.2
+psycopg2==2.9.5
 
 # Documentation
-Sphinx==4.3.1
+Sphinx==6.0.0
 
 # Testing
-pytest==6.2.5
-pytest-cov==3.0.0
+pytest==7.2.0
+pytest-cov==4.0.0
 coveralls==3.3.1
 
 # Linting
-flake8==4.0.1
-mccabe==0.6.1
-pep8==1.7.1
-pyflakes==2.4.0
+flake8==6.0.0

requirements.txt

@@ -1,2 +1,2 @@
-SQLAlchemy==1.4.28
-skosprovider==1.1.0
+SQLAlchemy==1.4.45
+skosprovider==1.2.0

setup.py

@@ -1,8 +1,5 @@
 #!/usr/bin/env python
 
-import os
-import sys
-
 try:
     from setuptools import setup
 except ImportError:
@@ -13,13 +10,13 @@
 ]
 
 requires = [
-    'skosprovider>=1.1.0',
+    'skosprovider>=1.2.0',
     'sqlalchemy',
 ]
 
 setup(
     name='skosprovider_sqlalchemy',
-    version='1.0.0',
+    version='2.0.0',
     description='A sqlAlchemy implementation of skosprovider.',
     long_description=open('README.rst').read(),
     long_description_content_type='text/x-rst',
@@ -34,16 +31,16 @@
     license='MIT',
     zip_safe=False,
     classifiers=[
-        'Development Status :: 4 - Beta',
+        'Development Status :: 5 - Production/Stable',
         'Intended Audience :: Developers',
         'Natural Language :: English',
         'License :: OSI Approved :: MIT License',
         'Programming Language :: Python',
-        'Programming Language :: Python :: 3.6',
-        'Programming Language :: Python :: 3.7',
         'Programming Language :: Python :: 3.8',
+        'Programming Language :: Python :: 3.9',
+        'Programming Language :: Python :: 3.10',
+        'Programming Language :: Python :: 3.11',
     ],
-    test_suite='nose.collector',
     entry_points="""\
     [console_scripts]
     init_skos_db = skosprovider_sqlalchemy.scripts.init_skos_db:main

skosprovider_sqlalchemy/models.py

@@ -10,13 +10,13 @@
 from sqlalchemy import Text
 from sqlalchemy import UniqueConstraint
 from sqlalchemy import event
-from sqlalchemy.ext.declarative import declarative_base
+from sqlalchemy import orm
 from sqlalchemy.ext.hybrid import hybrid_property
 from sqlalchemy.orm import backref
 from sqlalchemy.orm import relationship
 
 log = logging.getLogger(__name__)
-Base = declarative_base()
+Base = orm.declarative_base()
 
 concept_label = Table(
     'concept_label',
@@ -172,7 +172,7 @@ class Thing(Base):
     id = Column(Integer, primary_key=True)
     type = Column(String(30))
     concept_id = Column(
-        Integer,
+        String,
         nullable=False,
         index=True
     )
@@ -199,7 +199,9 @@ class Thing(Base):
         single_parent=True
     )
 
-    conceptscheme = relationship('ConceptScheme', backref='concepts')
+    conceptscheme = relationship(
+        'ConceptScheme', backref=orm.backref('concepts', cascade_backrefs=False)
+    )
     conceptscheme_id = Column(
         Integer,
         ForeignKey('conceptscheme.id'),
@@ -253,19 +255,21 @@ class Concept(Thing):
     narrower_concepts = relationship(
         'Concept',
         secondary=concept_hierarchy_concept,
-        backref=backref('broader_concepts', collection_class=set),
+        backref=backref('broader_concepts', collection_class=set, cascade_backrefs=False),
         primaryjoin='Concept.id==concept_hierarchy_concept.c.concept_id_broader',
         secondaryjoin='Concept.id==concept_hierarchy_concept.c.concept_id_narrower',
-        collection_class=set
+        collection_class=set,
+        cascade_backrefs=False,
     )
 
     narrower_collections = relationship(
         'Collection',
         secondary=concept_hierarchy_collection,
-        backref=backref('broader_concepts', collection_class=set),
+        backref=backref('broader_concepts', collection_class=set, cascade_backrefs=False),
         primaryjoin='Concept.id==concept_hierarchy_collection.c.concept_id_broader',
         secondaryjoin='Concept.id==concept_hierarchy_collection.c.collection_id_narrower',
-        collection_class=set
+        collection_class=set,
+        cascade_backrefs=False,
     )
 
     __mapper_args__ = {
@@ -325,7 +329,7 @@ class Collection(Thing):
     members = relationship(
         'Thing',
         secondary=collection_concept,
-        backref=backref('member_of', collection_class=set),
+        backref=backref('member_of', collection_class=set, cascade_backrefs=False),
         primaryjoin='Thing.id==collection_concept.c.collection_id',
         secondaryjoin='Thing.id==collection_concept.c.concept_id',
         collection_class=set