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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 906 456

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 224 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 275 139

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 33

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 58

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 189 90

Repositories

Showing 10 of 318 repositories
  • SelfControlledCohort Public

    An R package for performing self-controlled cohort analyses, a method to estimate risk by comparing time exposed with time unexposed among the exposed cohort.

    OHDSI/SelfControlledCohort’s past year of commit activity
    R 8 4 1 1 Updated Jan 7, 2025
  • ResultModelManager Public

    RMM is an R package designed to handle common ohdsi results data management functions by providing a common API for data model migrations and definitions

    OHDSI/ResultModelManager’s past year of commit activity
    R 4 Apache-2.0 3 11 0 Updated Jan 7, 2025
  • CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    OHDSI/CommonDataModel’s past year of commit activity
    HTML 906 456 78 12 Updated Jan 7, 2025
  • WebAPI Public

    OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    OHDSI/WebAPI’s past year of commit activity
    Java 133 Apache-2.0 168 129 (1 issue needs help) 22 Updated Jan 7, 2025
  • Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    OHDSI/Vocabulary-v5.0’s past year of commit activity
    PLpgSQL 224 Unlicense 75 223 9 Updated Jan 7, 2025
  • OmopSketch Public
    OHDSI/OmopSketch’s past year of commit activity
    R 1 Apache-2.0 0 8 (1 issue needs help) 0 Updated Jan 7, 2025
  • ClinicalCharacteristics Public

    [under development] table shell approach to OMOP characterization

    OHDSI/ClinicalCharacteristics’s past year of commit activity
    R 0 Apache-2.0 1 11 0 Updated Jan 7, 2025
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    OHDSI/ETL-LambdaBuilder’s past year of commit activity
    C# 14 Apache-2.0 15 1 2 Updated Jan 4, 2025
  • Strategus Public

    An R package for coordinating and executing analytics using HADES modules

    OHDSI/Strategus’s past year of commit activity
    R 6 11 19 5 Updated Jan 3, 2025
  • dbt-synthea Public

    [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

    OHDSI/dbt-synthea’s past year of commit activity
    Python 19 Apache-2.0 8 19 3 Updated Dec 28, 2024
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