Merge pull request #1020 from OBOFoundry/matentzn-patch-1

Add VT URI pattern for OBA to obo.yml

config/oba.yml

@@ -8,6 +8,10 @@ products:
 - oba.obo: https://github.com/obophenotype/bio-attribute-ontology/releases/latest/download/oba.obo
 - oba.json: https://github.com/obophenotype/bio-attribute-ontology/releases/latest/download/oba.json
 
+term_browser: custom
+example_terms:
+- OBA_0000001
+
 entries:
 - exact: /subsets/oba-basic.owl
   replacement: https://github.com/obophenotype/bio-attribute-ontology/releases/latest/download/oba-basic.owl
@@ -40,10 +44,6 @@ entries:
 - prefix: /imports/
   replacement: https://raw.githubusercontent.com/obophenotype/bio-attribute-ontology/master/imports/
 - prefix: /about/
-  replacement: http://www.ontobee.org/ontology/OBA?iri=http://purl.obolibrary.org/obo/
+  replacement: https://www.ebi.ac.uk/ols4/ontologies/oba/entities/http://purl.obolibrary.org/obo/
 - prefix: /
   replacement: https://github.com/obophenotype/bio-attribute-ontology/releases/latest/download/
-
-term_browser: ontobee
-example_terms:
-- OBA_0000001

config/obo.yml

@@ -148,6 +148,17 @@ entries:
   - from: /DOID_0014667
     to: https://disease-ontology.org/?id=DOID:0014667
 
+# Term redirects for OBA
+# Some OBA IDs start with VT, because they were originally sourced from VT
+- regex: ^/obo/OBA_((VT)?\d+)$
+  replacement: https://www.ebi.ac.uk/ols4/ontologies/oba/entities/http://purl.obolibrary.org/obo/OBA_$1
+  status: see other
+  tests:
+  - from: /OBA_0000001
+    to: https://www.ebi.ac.uk/ols4/ontologies/oba/entities/http://purl.obolibrary.org/obo/OBA_0000001
+  - from: /OBA_VT0000002
+    to: https://www.ebi.ac.uk/ols4/ontologies/oba/entities/http://purl.obolibrary.org/obo/OBA_VT0000002
+
 ### OBO Format Specification
 - exact: /oboformat/
   replacement: http://owlcollab.github.io/oboformat/doc/obo-syntax.html