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Fix COB:0000035 label in SSSOM mapping #285

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merged 2 commits into from
Sep 20, 2024
Merged

Fix COB:0000035 label in SSSOM mapping #285

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9b0150b
Fix label for COB:0000035 in mapping table
jamesaoverton Sep 18, 2024
4526a0b
Update cob-to-external component
jamesaoverton Sep 18, 2024
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80 changes: 73 additions & 7 deletions src/ontology/components/cob-to-external.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -36,9 +36,9 @@
xmlns:semapv="https://w3id.org/semapv/vocab/"
xmlns:NCBITaxon="http://purl.obolibrary.org/obo/NCBITaxon_">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cob/components/cob-to-external.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2024-08-20/components/cob-to-external.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2024-09-18/components/cob-to-external.owl"/>
<dc1:license rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://creativecommons.org/publicdomain/zero/1.0/</dc1:license>
<owl:versionInfo>2024-08-20</owl:versionInfo>
<owl:versionInfo>2024-09-18</owl:versionInfo>
<sssom:mapping_set_id rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/cob/components/cob-to-external.tsv</sssom:mapping_set_id>
</owl:Ontology>

Expand Down Expand Up @@ -1191,7 +1191,7 @@
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
<sssom:object_label>planned process</sssom:object_label>
<sssom:subject_label>planned process</sssom:subject_label>
<sssom:subject_label>completely executed planned process</sssom:subject_label>
</owl:Axiom>


Expand Down Expand Up @@ -1517,13 +1517,13 @@
<!-- http://purl.obolibrary.org/obo/COB_0000088 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000088">
<owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/DRON_0000005"/>
<owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/DRON_00000005"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23888"/>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/COB_0000088"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#equivalentClass"/>
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/DRON_0000005"/>
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/DRON_00000005"/>
<sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
<sssom:object_label>drug product</sssom:object_label>
<sssom:subject_label>drug product</sssom:subject_label>
Expand Down Expand Up @@ -1717,6 +1717,54 @@



<!-- http://purl.obolibrary.org/obo/COB_0000119 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000119">
<owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/OBI_0000067"/>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/COB_0000119"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#equivalentClass"/>
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/OBI_0000067"/>
<sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
<sssom:object_label>evaluant role</sssom:object_label>
<sssom:subject_label>evaluant role</sssom:subject_label>
</owl:Axiom>



<!-- http://purl.obolibrary.org/obo/COB_0000120 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000120">
<owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/IAO_0000015"/>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/COB_0000120"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#equivalentClass"/>
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/IAO_0000015"/>
<sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
<sssom:object_label>information carrier</sssom:object_label>
<sssom:subject_label>information representation</sssom:subject_label>
</owl:Axiom>



<!-- http://purl.obolibrary.org/obo/COB_0000121 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000121">
<owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#equivalentClass"/>
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
<sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
<sssom:object_label>measurement datum</sssom:object_label>
<sssom:subject_label>measurement datum</sssom:subject_label>
</owl:Axiom>



<!-- http://purl.obolibrary.org/obo/COB_0000123 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000123">
Expand Down Expand Up @@ -1749,9 +1797,9 @@



<!-- http://purl.obolibrary.org/obo/DRON_0000005 -->
<!-- http://purl.obolibrary.org/obo/DRON_00000005 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/DRON_0000005"/>
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DRON_00000005"/>



Expand Down Expand Up @@ -1819,6 +1867,12 @@



<!-- http://purl.obolibrary.org/obo/IAO_0000015 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000015"/>



<!-- http://purl.obolibrary.org/obo/IAO_0000027 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
Expand All @@ -1843,6 +1897,12 @@



<!-- http://purl.obolibrary.org/obo/IAO_0000109 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>



<!-- http://purl.obolibrary.org/obo/IAO_0000310 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000310"/>
Expand Down Expand Up @@ -1905,6 +1965,12 @@



<!-- http://purl.obolibrary.org/obo/OBI_0000067 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000067"/>



<!-- http://purl.obolibrary.org/obo/OBI_0000070 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000070"/>
Expand Down
2 changes: 1 addition & 1 deletion src/ontology/components/cob-to-external.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -66,7 +66,7 @@ COB:0000031 immaterial entity owl:equivalentClass BFO:0000141 immaterial entity
COB:0000032 geographical location rdfs:subClassOf owl:Thing owl:Thing semapv:ManualMappingCuration
COB:0000033 realizable owl:equivalentClass BFO:0000017 realizable entity . semapv:ManualMappingCuration
COB:0000034 process owl:equivalentClass BFO:0000015 process . semapv:ManualMappingCuration
COB:0000035 planned process owl:equivalentClass OBI:0000011 planned process . semapv:ManualMappingCuration
COB:0000035 completely executed planned process owl:equivalentClass OBI:0000011 planned process . semapv:ManualMappingCuration
COB:0000037 biological process owl:equivalentClass GO:0008150 biological process . semapv:ManualMappingCuration
COB:0000038 gene product or complex activity owl:equivalentClass GO:0003674 molecular function . semapv:ManualMappingCuration
COB:0000042 monoatomic ion owl:equivalentClass CHEBI:24867 monoatomic ion . semapv:ManualMappingCuration
Expand Down
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