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Enforce minimum dimensions for paddle (#99)
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edknv authored Sep 27, 2024
1 parent 2fea03c commit 064add5
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Showing 2 changed files with 63 additions and 43 deletions.
94 changes: 53 additions & 41 deletions src/nv_ingest/extraction_workflows/pdf/pdfium_helper.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,27 +2,39 @@
# All rights reserved.
# SPDX-License-Identifier: Apache-2.0

# Copyright (c) 2024, NVIDIA CORPORATION.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

import io
import logging
from math import ceil
from math import floor
from math import log
from typing import List
from typing import Tuple

import numpy as np
import pypdfium2 as libpdfium
import tritonclient.grpc as grpcclient
from PIL import Image

from nv_ingest.extraction_workflows.pdf import yolox_utils
from nv_ingest.schemas.metadata_schema import AccessLevelEnum
from nv_ingest.schemas.metadata_schema import TextTypeEnum
from nv_ingest.schemas.pdf_extractor_schema import PDFiumConfigSchema
from nv_ingest.util.converters import bytetools
from nv_ingest.util.image_processing.table_and_chart import join_cached_and_deplot_output
from nv_ingest.util.image_processing.transforms import crop_image
from nv_ingest.util.image_processing.transforms import numpy_to_base64
from nv_ingest.util.nim.helpers import call_image_inference_model
from nv_ingest.util.nim.helpers import create_inference_client
from nv_ingest.util.nim.helpers import perform_model_inference
from nv_ingest.util.pdf.metadata_aggregators import Base64Image
from nv_ingest.util.pdf.metadata_aggregators import ImageChart
from nv_ingest.util.pdf.metadata_aggregators import ImageTable
Expand All @@ -33,37 +45,31 @@
from nv_ingest.util.pdf.pdfium import PDFIUM_PAGEOBJ_MAPPING
from nv_ingest.util.pdf.pdfium import pdfium_pages_to_numpy
from nv_ingest.util.pdf.pdfium import pdfium_try_get_bitmap_as_numpy
from nv_ingest.util.nim.helpers import call_image_inference_model
from nv_ingest.util.nim.helpers import create_inference_client
from nv_ingest.util.nim.helpers import perform_model_inference

# Copyright (c) 2024, NVIDIA CORPORATION.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

PADDLE_MIN_WIDTH = 32
PADDLE_MIN_HEIGHT = 32
YOLOX_MAX_BATCH_SIZE = 8
YOLOX_MAX_WIDTH = 1536
YOLOX_MAX_HEIGHT = 1536
YOLOX_NUM_CLASSES = 3
YOLOX_CONF_THRESHOLD = 0.01
YOLOX_IOU_THRESHOLD = 0.5
YOLOX_MIN_SCORE = 0.1
YOLOX_FINAL_SCORE = 0.48

logger = logging.getLogger(__name__)


def extract_tables_and_charts_using_image_ensemble(
pages: List[libpdfium.PdfPage],
config: PDFiumConfigSchema,
max_batch_size: int = 8,
num_classes: int = 3,
conf_thresh: float = 0.01,
iou_thresh: float = 0.5,
min_score: float = 0.1,
final_thresh: float = 0.48,
max_batch_size: int = YOLOX_MAX_BATCH_SIZE,
num_classes: int = YOLOX_NUM_CLASSES,
conf_thresh: float = YOLOX_CONF_THRESHOLD,
iou_thresh: float = YOLOX_IOU_THRESHOLD,
min_score: float = YOLOX_MIN_SCORE,
final_thresh: float = YOLOX_FINAL_SCORE,
) -> List[Tuple[int, ImageTable]]:
"""
Extract tables and charts from a series of document pages using an ensemble of image-based models.
Expand Down Expand Up @@ -140,7 +146,7 @@ def extract_tables_and_charts_using_image_ensemble(

page_idx = 0
for batch in batches:
original_images, _ = pdfium_pages_to_numpy(batch, scale_tuple=(1536, 1536))
original_images, _ = pdfium_pages_to_numpy(batch, scale_tuple=(YOLOX_MAX_WIDTH, YOLOX_MAX_HEIGHT))

original_image_shapes = [image.shape for image in original_images]
input_array = prepare_images_for_inference(original_images)
Expand Down Expand Up @@ -269,15 +275,15 @@ def process_inference_results(

for annotation_dict in annotation_dicts:
new_dict = {}
if 'table' in annotation_dict:
new_dict['table'] = [bb for bb in annotation_dict["table"] if bb[4] >= final_thresh]
if 'chart' in annotation_dict:
new_dict['chart'] = [bb for bb in annotation_dict["chart"] if bb[4] >= final_thresh]
if 'title' in annotation_dict:
new_dict['title'] = annotation_dict["title"]
if "table" in annotation_dict:
new_dict["table"] = [bb for bb in annotation_dict["table"] if bb[4] >= final_thresh]
if "chart" in annotation_dict:
new_dict["chart"] = [bb for bb in annotation_dict["chart"] if bb[4] >= final_thresh]
if "title" in annotation_dict:
new_dict["title"] = annotation_dict["title"]
inference_results.append(new_dict)

return inference_results
return inference_results


# Handle individual table/chart extraction and model inference
Expand Down Expand Up @@ -328,18 +334,24 @@ def handle_table_chart_extraction(
for idx, bboxes in enumerate(objects):
*bbox, _ = bboxes
h1, w1, h2, w2 = bbox * np.array([height, width, height, width])
cropped = original_image[floor(w1) : ceil(w2), floor(h1) : ceil(h2)] # noqa: E203

img = Image.fromarray(cropped.astype(np.uint8))
with io.BytesIO() as buffer:
img.save(buffer, format="PNG")
base64_img = bytetools.base64frombytes(buffer.getvalue())

if label == "table":
# PaddleOCR NIM enforces minimum dimensions for TRT engines.
cropped = crop_image(
original_image,
(h1, w1, h2, w2),
min_width=PADDLE_MIN_WIDTH,
min_height=PADDLE_MIN_HEIGHT,
)
base64_img = numpy_to_base64(cropped)

table_content = call_image_inference_model(paddle_client, "paddle", cropped)
table_data = ImageTable(table_content, base64_img, (w1, h1, w2, h2))
tables_and_charts.append((page_idx, table_data))
elif label == "chart":
cropped = crop_image(original_image, (h1, w1, h2, w2))
base64_img = numpy_to_base64(cropped)

deplot_result = call_image_inference_model(deplot_client, "google/deplot", cropped)
cached_result = call_image_inference_model(cached_client, "cached", cropped)
chart_content = join_cached_and_deplot_output(cached_result, deplot_result)
Expand Down
12 changes: 10 additions & 2 deletions src/nv_ingest/util/image_processing/transforms.py
Original file line number Diff line number Diff line change
Expand Up @@ -74,7 +74,9 @@ def pad_image(
return canvas, (pad_width, pad_height)


def crop_image(array: np.array, bbox: Tuple[int, int, int, int]) -> Optional[np.ndarray]:
def crop_image(
array: np.array, bbox: Tuple[int, int, int, int], min_width: int = 1, min_height: int = 1
) -> Optional[np.ndarray]:
"""
Crops a NumPy array representing an image according to the specified bounding box.
Expand All @@ -84,6 +86,12 @@ def crop_image(array: np.array, bbox: Tuple[int, int, int, int]) -> Optional[np.
The image as a NumPy array.
bbox : Tuple[int, int, int, int]
The bounding box to crop the image to, given as (w1, h1, w2, h2).
min_width : int, optional
The minimum allowable width for the cropped image. If the cropped width is smaller than this value,
the function returns None. Default is 1.
min_height : int, optional
The minimum allowable height for the cropped image. If the cropped height is smaller than this value,
the function returns None. Default is 1.
Returns
-------
Expand All @@ -96,7 +104,7 @@ def crop_image(array: np.array, bbox: Tuple[int, int, int, int]) -> Optional[np.
w1 = max(floor(w1), 0)
w2 = min(ceil(w2), array.shape[1])

if (w2 - w1 <= 0) or (h2 - h1 <= 0):
if (w2 - w1 < min_width) or (h2 - h1 < min_height):
return None

# Crop the image using the bounding box
Expand Down

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