run build process using slurm

.github/workflows/CEFI_MOM6-ci.yaml

@@ -32,23 +32,23 @@ jobs:
       run: |
         cd ${{ env.TEST_DIR }}/CEFI_MOM6_CHECK/builds
         pwd
-        img=/gpfs/f6/ira-cefi/world-shared/container/ubuntu22.04-intel-ufs-env-v1.8.0-llvm.img
-        apptainer exec -B /gpfs -B /ncrc/home2/Yi-cheng.Teng:/ncrc/home2/Yi-cheng.Teng $img bash linux-build.bash -m docker -p linux-intel -t repro -f mom6sis2
-        #jobid=$(sbatch --parsable ci_build_driver.sh | awk -F';' '{print $1}' | cut -f1)
-        ##
-        #sleep 1
-        #while :; do
-        #    job_status=$(squeue -h -j "$jobid" -o "%T" 2>/dev/null)
-        #    if [ -z "$job_status" ]; then
-        #       echo "Job with ID $jobid is not found or completed."
-        #       break
-            else
-        #       echo "Job with ID $jobid is still running."
-        #       echo "Job Status: $job_status"
-        #    fi
-        #    sleep 60  # Adjust the sleep duration as needed
-        #done
+        #img=/gpfs/f6/ira-cefi/world-shared/container/ubuntu22.04-intel-ufs-env-v1.8.0-llvm.img
+        #apptainer exec -B /gpfs -B /ncrc/home2/Yi-cheng.Teng:/ncrc/home2/Yi-cheng.Teng $img bash linux-build.bash -m docker -p linux-intel -t repro -f mom6sis2
+        jobid=$(sbatch --parsable ci_build_driver.sh | awk -F';' '{print $1}' | cut -f1)
         #
+        sleep 1
+        while :; do
+            job_status=$(squeue -h -j "$jobid" -o "%T" 2>/dev/null)
+            if [ -z "$job_status" ]; then
+               echo "Job with ID $jobid is not found or completed."
+               break
+            else
+               echo "Job with ID $jobid is still running."
+               echo "Job Status: $job_status"
+            fi
+            sleep 60  # Adjust the sleep duration as needed
+        done
+        
         check_file="${{ env.TEST_DIR }}/CEFI_MOM6_CHECK/builds/build/docker-linux-intel/ocean_ice/repro/MOM6SIS2"
         if [ -f "$check_file" ]; then
             echo "PASSED: $check_file"

builds/ci_build_driver.sh

@@ -1,65 +1,23 @@
 #!/bin/bash
 #SBATCH --nodes=1
-#SBATCH --time=60
-#SBATCH --job-name="MOM6SIS2_ci_build"
-#SBATCH --output=MOM6SIS2_ci_build_o.%j
-#SBATCH --error=MOM6SIS2_ci_build_e.%j
-#SBATCH --qos=debug
+#SBATCH --time=360
+#SBATCH --job-name="MOM6SIS2_container_build"
+#SBATCH --output=MOM6SIS2_container_build_o.%j
+#SBATCH --error=MOM6SIS2_container_build_e.%j
+#SBATCH --qos=normal
 #SBATCH --partition=batch
-#SBATCH --clusters=c5
-#SBATCH --account=cefi
+#SBATCH --clusters=c6
+#SBATCH --account=ira-cefi
 
 #
 [ -d "build" ] && rm -rf build
 
 #
-echo "Build MOM6SIS2-COBALT for CI testing started:  " `date`
+echo "Build MOM6SIS2-COBALT using container started:  " `date`
 
 #
-machine_name="gaea" 
-platform="ncrc5.intel23"
-target="repro"
-flavor="fms1_mom6sis2"
-
-FMSlib_PATH="/gpfs/f5/cefi/scratch/Yi-cheng.Teng/github/FMS/2024.02_FMS1"
-rootdir=$(pwd)
-abs_rootdir=$rootdir
-
-echo $abs_rootdir
-
-#load modules              
-source $MODULESHOME/init/bash
-source $rootdir/$machine_name/$platform.env
-. $rootdir/$machine_name/$platform.env
-
-makeflags="NETCDF=3"
-
-if [[ $target =~ "repro" ]] ; then
-   makeflags="$makeflags REPRO=1"
-fi
-
-srcdir=$abs_rootdir/../src
-
-#
-sed -i 's/static pid_t gettid(void)/pid_t gettid(void)/g' $srcdir/FMS/affinity/affinity.c
-
-#
-if [[ $flavor == "fms1_mom6sis2" ]] ; then
-    echo "build mom6sis2 with FMS1 cap" 	
-
-    mkdir -p build/$machine_name-$platform/ocean_ice/$target
-    pushd build/$machine_name-$platform/ocean_ice/$target
-    rm -f path_names
-    $srcdir/mkmf/bin/list_paths $srcdir/MOM6/{config_src/infra/FMS1,config_src/memory/dynamic_symmetric,config_src/drivers/FMS_cap,config_src/external/ODA_hooks,config_src/external/database_comms,config_src/external/drifters,config_src/external/stochastic_physics,pkg/GSW-Fortran/{modules,toolbox}/,src/{*,*/*}/} $srcdir/SIS2/{config_src/dynamic_symmetric,config_src/external/Icepack_interfaces,src} $srcdir/icebergs/src $srcdir/FMS/{coupler,include}/ $srcdir/{ocean_BGC/generic_tracers,ocean_BGC/mocsy/src}/ $srcdir/{atmos_null,ice_param,land_null,coupler/shared/,coupler/full/}/
-
-   compiler_options='-DINTERNAL_FILE_NML -DMAX_FIELDS_=600 -DNOT_SET_AFFINITY -Duse_deprecated_io -D_USE_MOM6_DIAG -D_USE_GENERIC_TRACER -DUSE_PRECISION=2 -D_USE_LEGACY_LAND_ -Duse_AM3_physics'
-
-   $srcdir/mkmf/bin/mkmf -t $abs_rootdir/$machine_name/$platform.mk -o "-I${FMSlib_PATH}/shared/$target" -p MOM6SIS2 -l "-L${FMSlib_PATH}/shared/$target -lfms" -c "$compiler_options" path_names
-
-   make $makeflags MOM6SIS2 
-
-fi
-
+export img=/gpfs/f6/ira-cefi/world-shared/container/ubuntu22.04-intel-ufs-env-v1.8.0-llvm.img
+apptainer exec -B /gpfs -B /ncrc/home2/Yi-cheng.Teng:/ncrc/home2/Yi-cheng.Teng $img bash linux-build.bash -m docker -p linux-intel -t repro -f mom6sis2
 
 #
-echo "Build MOM6SIS2-COBALT for CI testing ended:  " `date`
+echo "Build MOM6SIS2-COBALT using container ended:  " `date`