release/public-v2: turn option DEPLOY on by default, update documentation

[climbfuji]

This PR

• turns on the option to deploy modules files by default
• updates the documentation for the changes in this PR and in release/public-v2: add NCEPLIBS umbrella modulefile and shell scripts for SRW App release NCEPLIBS#148 for all platforms (NCEPLIBS PR has been committed, new hash for release/public-v2 is NOAA-EMC/NCEPLIBS@f4482d4)
  • not yet updated: Docker container
• remove manual NCEPLIBS-external cmake config file (left from release/public-v1)
• create libjpeg and jasper modules

This has been tested on all platforms (with ufs-weather-model as in ufs-community/ufs-weather-model#248) except odin.intel, wcoss_cray, Docker container:

• cheyenne_gnu
• cheyenne_intel
• gaea_intel
• hera_gnu
• hera_intel
• jet_intel
• macos_clanggfortran
• macos_gccgfortran
• redhat_gnu (AWS)
• orion_intel
• stampede_intel
• ubuntu_gnu (AWS)
• wcoss_dell_p3

[RatkoVasic-NOAA]

I'm testing it on WCOSS-Dell. I had to add two lines for the compilation of the https://github.com/NOAA-EMC/NCEPLIBS-external:
587 18:25 module use /gpfs/dell2/emc/modeling/noscrub/emc.nemspara/soft/modulefiles
588 18:25 module load netcdf_parallel/4.7.4

[climbfuji]

I'm testing it on WCOSS-Dell. I had to add two lines for the compilation of the https://github.com/NOAA-EMC/NCEPLIBS-external:
587 18:25 module use /gpfs/dell2/emc/modeling/noscrub/emc.nemspara/soft/modulefiles
588 18:25 module load netcdf_parallel/4.7.4

Thanks, I'll add them, hopefully correct. Further down, for building the model. You shouldn't (have to) load esmf/8.0.0_ParallelNetCDF, because this is built by NCEPLIBS-external. Can you try that, please?

[RatkoVasic-NOAA]

I still haven't got to the model. It is failing in NCEPLIBS:
-- Installing NCEPLIBS from /gpfs/dell2/emc/modeling/noscrub/Ratko.Vasic/wrk/tmp/NCEPLIBS-external-1/doc/src/NCEPLIBS/COMPONENTS
-- Installing NCEPLIBS at /gpfs/dell2/emc/modeling/noscrub/Ratko.Vasic/wrk/tmp/NCEPLIBS-external-1/doc/src/NCEPLIBS-external-1
-- Installing NCEPLIBS modulefiles at /gpfs/dell2/emc/modeling/noscrub/Ratko.Vasic/wrk/tmp/NCEPLIBS-external-1/doc/src/NCEPLIBS-external-1/modules, NCEPLIBS shell scripts at /gpfs/dell2/emc/modeling/noscrub/Ratko.Vasic/wrk/tmp/NCEPLIBS-external-1/doc/src/NCEPLIBS-external-1/bin
CMake Error at CMakeLists.txt:259 (find_package):
By not providing "FindNetCDF.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "NetCDF", but
CMake did not find one.

Could not find a package configuration file provided by "NetCDF" with any
of the following names:

NetCDFConfig.cmake
netcdf-config.cmake

Add the installation prefix of "NetCDF" to CMAKE_PREFIX_PATH or set
"NetCDF_DIR" to a directory containing one of the above files. If "NetCDF"
provides a separate development package or SDK, be sure it has been
installed.

[climbfuji]

I still haven't got to the model. It is failing in NCEPLIBS:
-- Installing NCEPLIBS from /gpfs/dell2/emc/modeling/noscrub/Ratko.Vasic/wrk/tmp/NCEPLIBS-external-1/doc/src/NCEPLIBS/COMPONENTS
-- Installing NCEPLIBS at /gpfs/dell2/emc/modeling/noscrub/Ratko.Vasic/wrk/tmp/NCEPLIBS-external-1/doc/src/NCEPLIBS-external-1
-- Installing NCEPLIBS modulefiles at /gpfs/dell2/emc/modeling/noscrub/Ratko.Vasic/wrk/tmp/NCEPLIBS-external-1/doc/src/NCEPLIBS-external-1/modules, NCEPLIBS shell scripts at /gpfs/dell2/emc/modeling/noscrub/Ratko.Vasic/wrk/tmp/NCEPLIBS-external-1/doc/src/NCEPLIBS-external-1/bin
CMake Error at CMakeLists.txt:259 (find_package):
By not providing "FindNetCDF.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "NetCDF", but
CMake did not find one.

Could not find a package configuration file provided by "NetCDF" with any
of the following names:

NetCDFConfig.cmake
netcdf-config.cmake

Add the installation prefix of "NetCDF" to CMAKE_PREFIX_PATH or set
"NetCDF_DIR" to a directory containing one of the above files. If "NetCDF"
provides a separate development package or SDK, be sure it has been
installed.

You didn't clone NCEPLIBS with the --recursive option, I suppose. That means the CMakeModules submodule/subdirectory is missing.

[RatkoVasic-NOAA]

600 18:49 git clone --recursive https://github.com/NOAA-EMC/NCEPLIBS
604 18:49 git branch -a
605 18:49 git chackout release/public-v2

Maybe wrong branch?

[climbfuji]

600 18:49 git clone --recursive https://github.com/NOAA-EMC/NCEPLIBS
604 18:49 git branch -a
605 18:49 git chackout release/public-v2

Maybe wrong branch?

I think this leaves you with the submodules (none) of the develop branch. You need to do

git clone --recursive -b release/public-v2 https://github.com/NOAA-EMC/NCEPLIBS

[RatkoVasic-NOAA]

will try now
It's compiling
make failed somewhere, I'll start from the beginning.

make[2]: Leaving directory /gpfs/dell2/emc/modeling/noscrub/Ratko.Vasic/wrk/tmp/NCEPLIBS-external-1/doc/src/NCEPLIBS/build' [ 80%] Built target crtm make[1]: Leaving directory /gpfs/dell2/emc/modeling/noscrub/Ratko.Vasic/wrk/tmp/NCEPLIBS-external-1/doc/src/NCEPLIBS/build'
make: *** [all] Error 2

[RatkoVasic-NOAA]

Scanning dependencies of target NEMS.exe
[100%] Building Fortran object CMakeFiles/NEMS.exe.dir/NEMS/src/MAIN_NEMS.F90.o
[100%] Linking Fortran executable NEMS.exe
[100%] Built target NEMS.exe

[climbfuji]

Scanning dependencies of target NEMS.exe
[100%] Building Fortran object CMakeFiles/NEMS.exe.dir/NEMS/src/MAIN_NEMS.F90.o
[100%] Linking Fortran executable NEMS.exe
[100%] Built target NEMS.exe

Great, thanks for that. Where the instructions I sent you by email complete? I need to update the README file in this PR. Thanks!