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As stated in issue #23 , this PR is created to update the submodules in HDASApp. Besides that, the corresponding Cmake files as well as module files are also updated. The yaml files inside hafs-test are updated as well to reflect the updates in fv3-jedi and UFO variable name changes.
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177
hafs-test/testinput/sfcship_singleob_airTemperature_fv3jedi_3DEnVar.yaml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,177 @@ | ||
| _filenames: &fv3file_names | ||
| filename_core: '20200825.120000.fv_core.res.tile1.nc' | ||
| filename_trcr: '20200825.120000.fv_tracer.res.tile1.nc' | ||
| filename_sfcd: '20200825.120000.sfc_data.nc' | ||
| filename_sfcw: '20200825.120000.fv_srf_wnd.res.tile1.nc' | ||
| filename_cplr: '20200825.120000.coupler.res' | ||
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| _geometry: &geometry_configs | ||
| namelist filename: DataFix/input_hafs.nml | ||
| field metadata override: Data/fieldmetadata/gfs-restart.yaml | ||
| akbk: DataFix/fix/akbk65.nc | ||
| npx: 721 | ||
| npy: 541 | ||
| npz: 65 | ||
| layout: [10,6] | ||
| io_layout: [1,1] | ||
| ntiles: 1 | ||
| fms initialization: | ||
| namelist filename: DataFix/fmsmpp.nml | ||
| field table filename: DataFix/field_table | ||
| fieldsets: | ||
| fieldset: DataFix/dynamics_lam_cmaq.yaml | ||
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||
| cost function: | ||
| cost type: 3D-Var | ||
| time window: | ||
| begin: &InitialDate '2020-08-25T09:00:00Z' | ||
| length: PT6H | ||
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||
| geometry: | ||
| <<: *geometry_configs | ||
| analysis variables: &ana_vars [eastward_wind,northward_wind,air_temperature,air_pressure_thickness,water_vapor_mixing_ratio_wrt_moist_air,cloud_liquid_ice,cloud_liquid_water,ozone_mass_mixing_ratio] | ||
| background: | ||
| datetime: &AnaDate '2020-08-25T12:00:00Z' | ||
| filetype: fms restart | ||
| datapath: Data/bkg | ||
| <<: *fv3file_names | ||
| state variables: &state_vars [eastward_wind,northward_wind,air_temperature,air_pressure_thickness,water_vapor_mixing_ratio_wrt_moist_air,cloud_liquid_ice,cloud_liquid_water,ozone_mass_mixing_ratio,phis,slmsk,sheleg,vtype,stype,vfrac,stc,smc,snwdph,u_srf,v_srf,f10m] | ||
| background error: | ||
| covariance model: ensemble | ||
| members from template: | ||
| template: | ||
| datetime: *AnaDate | ||
| filetype: fms restart | ||
| state variables: *state_vars | ||
| datapath: ens/mem%mem%/ | ||
| <<: *fv3file_names | ||
| pattern: '%mem%' | ||
| nmembers: 5 | ||
| zero padding: 3 | ||
| localization: | ||
| localization method: SABER | ||
| saber central block: | ||
| saber block name: BUMP_NICAS | ||
| active variables: *ana_vars | ||
| read: | ||
| io: | ||
| data directory: Data/bump | ||
| files prefix: fv3jedi_bumpparameters_nicas_lam_atm | ||
| alias: | ||
| - in code: common | ||
| in file: t_250km | ||
| drivers: | ||
| multivariate strategy: duplicated | ||
| read local nicas: true | ||
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| #------------------------------------------------------------------------------ | ||
| observations: | ||
| observers: | ||
| - obs space: | ||
| name: sfcshp | ||
| obsdatain: | ||
| engine: | ||
| type: H5File | ||
| obsfile: Data/obs/sfcshp.tm00.singleob.nc | ||
| obsdataout: | ||
| engine: | ||
| type: H5File | ||
| obsfile: diag_SFCSHP.prepbufr_singleobs.nc | ||
| allow overwrite: true | ||
| io pool: | ||
| max pool size: 1 | ||
| observed variables: [airTemperature] | ||
| simulated variables: [airTemperature] | ||
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||
| obs operator: | ||
| name: Composite | ||
| components: | ||
| - name: VertInterp | ||
| vertical coordinate: air_pressure | ||
| observation vertical coordinate: pressure | ||
| observation vertical coordinate group: MetaData | ||
| interpolation method: log-linear | ||
| variables: | ||
| - name: airTemperature | ||
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||
| obs post filters: | ||
| - filter: Perform Action | ||
| filter variables: | ||
| - name: airTemperature | ||
| where: | ||
| - variable: ObsType/airTemperature | ||
| is_in: 180 | ||
| action: | ||
| name: assign error | ||
| error parameter: 0.92823 | ||
| defer to post: true | ||
| # Adjusted error after initial assignment (qcmod.f90) | ||
| - filter: Perform Action | ||
| filter variables: | ||
| - name: airTemperature | ||
| where: | ||
| - variable: ObsType/airTemperature | ||
| is_in: 180 | ||
| action: | ||
| name: inflate error | ||
| inflation variable: | ||
| name: ObsFunction/ObsErrorFactorConventional | ||
| options: | ||
| test QCflag: PreQC | ||
| test QCthreshold: 3 | ||
| inflate variables: [airTemperature] | ||
| pressure: MetaData/pressure | ||
| distance threshold: -1. | ||
| defer to post: true | ||
| # error inflation based on pressure check | ||
| - filter: Perform Action | ||
| filter variables: | ||
| - name: airTemperature | ||
| where: | ||
| - variable: ObsType/airTemperature | ||
| is_in: 180 | ||
| action: | ||
| name: inflate error | ||
| inflation variable: | ||
| name: ObsFunction/ObsErrorFactorPressureCheck | ||
| options: | ||
| variable: airTemperature | ||
| inflation factor: 8.0 | ||
| geovar_sfc_geomz: surface_geometric_height | ||
| defer to post: true | ||
| #- filter: Bounds Check | ||
| # filter variables: | ||
| # - name: airTemperature | ||
| # minvalue: 195.0 | ||
| # maxvalue: 327.0 | ||
| # action: | ||
| # name: reject | ||
| #- filter: Background Check | ||
| # filter variables: | ||
| # - name: airTemperature | ||
| # threshold: 7.0 | ||
| # absolute threshold: 9.0 | ||
| # action: | ||
| # name: reject | ||
| # defer to post: true | ||
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||
| variational: | ||
| minimizer: | ||
| algorithm: DRPCG # Derber-Rosati Conjugate Gradients | ||
| iterations: | ||
| - ninner: 50 | ||
| gradient norm reduction: 1e-60 | ||
| geometry: | ||
| <<: *geometry_configs | ||
| diagnostics: | ||
| departures: bkgmob | ||
| final: | ||
| diagnostics: | ||
| departures: oman | ||
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| output: | ||
| filetype: fms restart | ||
| datapath: Data/analysis/ | ||
| prefix: envar-fv3_hafs_singleOBS_sfcshp #Ens3dvar-fv3_lam-C775 | ||
| frequency: PT3H | ||
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