Initial commit

.github/pull_request_template/dev-merge_template.md

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+---
+name: "🔨 Merge to Dev Template"
+about: Create a PR for a merge into the dev branch. 
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+:point_right: Read the instructions marked with this emoji to guide use of this template. Before submission, delete all the guidance text.
+
+## Changes Made
+:point_right: A succinct description of the changes made and to which project component.  Delete all guidance text, leaving only the header and the relevant rows in the table below.
+
+| Component | Changes |
+| :-- | :-- |
+| Literature Review | INSERT TEXT HERE|
+| Materials | INSERT TEXT HERE|
+| Data Monitoring | INSERT TEXT HERE|
+| Preprocessing | INSERT TEXT HERE|
+| Other | INSERT TEXT HERE|
+
+## Checklist
+:point_right: Check below to confirm you have taken the following steps before submitting this PR:
+- [ ] All my proposed changes have been pushed to remote.
+- [ ] This pull request is showing as a merge into `dev` (not `main`).
+- [ ] I have assigned a specific reviewer for this pull request.
+- [ ] I have connected any associated issues to this pull request so they will be automatically closed when the PR is merged. (Do not connect an Epic to a pull request for a merge into `dev`.)
+
+## Notes
+:point_right: What additional information should a reviewer know?

.github/pull_request_template/main-merge_template.md

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+---
+name: 🎁 Merge to Main Template"
+about: Create a PR for a merge into the main branch. 
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+:point_right: Read the instructions marked with this emoji to guide use of this template. Before submission, delete all the guidance text.
+
+## Epic(s) Completed 
+:point_right: A bulleted list of Epics that will be complete with the merge of this pull request.
+
+## Checklist
+:point_right: Check below to confirm you have taken the following steps before submitting this PR:
+- [ ] This pull request is showing as a merge into `main`.
+- [ ] I have assigned a specific reviewer for this pull request.
+- [ ] I have connected any associated Epics to this pull request so they will be automatically closed when the PR is merged.
+
+## Notes
+:point_right: What additional information should a reviewer know?

.github/workflows/pylint.yml

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+name: Pylint
+
+on: [push, pull_request]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [3.9]
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install flake8 notebook
+        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+    - name: Lint with flake8
+      run: |
+       flake8 . --ignore=E

.gitignore

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+# OS specific files
+.DS_Store
+
+# data specific files
+derivatives/*
+sourcedata/

CONTRIBUTING.md

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+# Contributing to [project name]
+
+## Overview
+Please note our general guidelines for contributing to NDCLab projects [here](https://ndclab.github.io/wiki/docs/contributing.html).
+
+* [Roadmap](#Roadmap)  
+* [Directory Structure](#Directory-Structure)  
+* [Scripts](#Scripts)
+* [Containers](#Containers)  
+* [Workflow](#Workflow)  
+
+
+## Roadmap
+Please see the roadmap available on the [README.md](README.md) file of this repository.
+
+:point_right: Keep the "Roadmap" text above but update the link to the `readme` for your repo. And, of course, delete this note before publishing the contributing file.
+
+
+## Directory Structure
+:point_right: Update this section as appropriate for your repo, then delete this note before publishing.
+
+```yml
+project-name
+├── code
+├── containers
+├── CONTRIBUTING.md
+├── data-monitoring
+    ├──data-monitoring-log.md
+    ├──data-monitoring-protocol.md
+    ├──postprocessing-check
+    ├──results-check
+├── derivatives
+    ├──preprocessed
+├── literature
+├── materials
+    ├──questionnaires
+    ├──task1
+          ├──protocol.md
+          ├──scripts
+          ├──stimuli
+├── notebook.md
+├── README.md
+├── sourcedata
+    ├──checked
+    ├──raw
+```
+
+### Container
+To ensure reproducibility of results and software, a default docker file and singularity container are included with this template repository. The respective [README.md](README.md) contains a comprehensive guide on how to get started with the dockerfile. A step-by-step guide to getting started also included in the following [video](https://www.youtube.com/watch?v=oO8n3y23b6M). 
+
+
+## Workflow
+Workflow for both internal and external lab members is outlined on the [NDCLab contributing wiki page](https://ndclab.github.io/wiki/docs/contributing.html).