Merge pull request #4 from nolanwelch/read-study1-review

Implement changes based on HPC data review
NDCLab · Sep 17, 2024 · 61f2d58 · 61f2d58
2 parents b45478f + 04e246f
commit 61f2d58
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diff --git a/.gitignore b/.gitignore
@@ -4,3 +4,20 @@
 # data specific files
 derivatives/*
 sourcedata/
+analysis/
+
+# monitoring scripts and files
+data-monitoring/central-tracker_*.csv
+data-monitoring/data-monitoring-log.md
+data-monitoring/hallMonitor.sh
+data-monitoring/hallMonitor.sub
+data-monitoring/update-tracker.py
+data-monitoring/verify-copy.py
+data-monitoring/check-datadict.py
+data-monitoring/check-id.py
+data-monitoring/slurm*.out
+data-monitoring/preprocess*.out
+data-monitoring/data-dictionary/central-tracker_datadict_latest.csv
+data-monitoring/preprocess.sub
+data-monitoring/rename-cols.py
+data-monitoring/ndar/
diff --git a/literature/sub-3200008_ls/passage-set-11a/boots_11g.xlsx b/literature/sub-3200008_ls/passage-set-11a/boots_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11a/elephant_11g.xlsx b/literature/sub-3200008_ls/passage-set-11a/elephant_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11a/muffins_11g.xlsx b/literature/sub-3200008_ls/passage-set-11a/muffins_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11a/pencils_11g.xlsx b/literature/sub-3200008_ls/passage-set-11a/pencils_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11a/pine_11g.xlsx b/literature/sub-3200008_ls/passage-set-11a/pine_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11a/raspberries_11g.xlsx b/literature/sub-3200008_ls/passage-set-11a/raspberries_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11a/roses_11g.xlsx b/literature/sub-3200008_ls/passage-set-11a/roses_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11a/sparrows_11g.xlsx b/literature/sub-3200008_ls/passage-set-11a/sparrows_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11a/trucks_11g.xlsx b/literature/sub-3200008_ls/passage-set-11a/trucks_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11b/blackberries_11g.xlsx b/literature/sub-3200008_ls/passage-set-11b/blackberries_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11b/cars_11g.xlsx b/literature/sub-3200008_ls/passage-set-11b/cars_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11b/cupcakes_11g.xlsx b/literature/sub-3200008_ls/passage-set-11b/cupcakes_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11b/finches_11g.xlsx b/literature/sub-3200008_ls/passage-set-11b/finches_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11b/giraffe_11g.xlsx b/literature/sub-3200008_ls/passage-set-11b/giraffe_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11b/oak_11g.xlsx b/literature/sub-3200008_ls/passage-set-11b/oak_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11b/pens_11g.xlsx b/literature/sub-3200008_ls/passage-set-11b/pens_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11b/sandals_11g.xlsx b/literature/sub-3200008_ls/passage-set-11b/sandals_11g.xlsx
diff --git a/literature/sub-3200008_ls/passage-set-11b/tulips_11g.xlsx b/literature/sub-3200008_ls/passage-set-11b/tulips_11g.xlsx
diff --git a/literature/sub-3200008_ls/sub-3200008.xlsx b/literature/sub-3200008_ls/sub-3200008.xlsx