Moving everything from commit ad57fdd

README.md

@@ -0,0 +1,26 @@
+Changes of the current version compared to public TIEGCM v2\.0 \(2016\):
+
+- The job script is modified to support arbitrary combination of horizontal and vertical resolutions, change of magnetic grids is also supported\.
+- The job script, defs\.h and initialization of some altitude\-dependent variables \(xfac/ar\_glbm/aureff/bdriz\) are rewritten to support the extension of the upper boundary\.
+- The modeltime of input/output is set to 4 digits \(day/hour/minute/second\) instead of the old 3\-digit format \(day/hour/minute\) to allow a higher cadence\.
+- The calculation of N2 mixing ratio, mean molecular mass and scale height is unified in the model to avoid recalculation\. Some artificial caps of N2 mixing ratio are removed\.
+- Rewrite the Helium module and it is now included with in all resolutions \(default on\)\.
+- The old Fourier filter is replaced with the new ring filter\.
+- An additional input parameter NSTEP\_SUB is introduced to control the number of O\+ sub\-cyling\.
+- NetCDF4 parallel IO is turned on to reduce the memory usage on root task\.
+- ESMF calls are modified to ensure bit\-for\-bit reproducibility\.
+- IGRF is updated to the newest version\.
+- Magnetospheric coupling module is rewritten to support in-memory MPI data transfer\.
+- Simplify the code by removing unused parameters/argmuments/variables in some functions\.
+- Some MPI subroutines are rewritten to allow a speed boost\.
+- dipmin is set to sin\(dlat\*2\*dtr\) instead of manual setup in different resolutions\.
+- Some minor bug fixes\.
+
+Change of physics:
+- Modified the coefficients of solar heating \(Astrid Maute\)\.
+- Add a scaling factor in accounting for the height variation of equatorward electric field \(elam\) \(Astrid Maute\)\.
+- Include the field\-aligned ion drag in the momentum equation \(Jiuhou Lei\)\.
+- Change the parameterization scheme of electron heat flux \(fed\) near the equator in settei \(Tong Dang\)\.
+- Use a sixth\-order polynomial for thermal electron heating efficiency \(Yihui Cai\)\.
+- Electrojet turbulent heating, default off \(Jing Liu\)\.
+- Empirical SAPS, default off \(Cheng Sheng\)\.

benchmarks/archive_hpss

@@ -8,7 +8,7 @@ set mycwd = `pwd` # probably not necessary
 set model = tiegcm2.0
 set hpss_home  = /home/tgcm/$model
 set data_home  = /glade/p/hao/tgcm/data
-set bench_home = /glade/p/hao/tgcm/tiegcm_benchmarks
+set bench_home = /glade/p/hao/tgcm/tiegcm2.0/benchmarks
 #
 # Save model source that generated the benchmarks:
 #

benchmarks/postproc/runproc_climatology

@@ -3,7 +3,7 @@
 # Make runs of post-processor to generate plots from one-year climatology benchmark runs:
 #
 set mycwd = `pwd`
-set home = /glade/p/hao/tgcm/tiegcm_benchmarks            # base working directory
+set home = /glade/p/hao/tgcm/tiegcm2.0/benchmarks         # base working directory
 set proc = $home/postproc/tgcmproc_f90/tgcmproc/tgcmproc  # python app to make multiple proc runs
 
 set singleut  = no   # generally do not make instantaneous plots for climatology

benchmarks/postproc/runproc_seasons

@@ -4,7 +4,7 @@
 # (instantaneous and time-dependent)
 #
 set mycwd = `pwd`
-set home = /glade/p/hao/tgcm/tiegcm_benchmarks            # base working directory
+set home = /glade/p/hao/tgcm/tiegcm2.0/benchmarks         # base working directory
 set proc = $home/postproc/tgcmproc_f90/tgcmproc/tgcmproc  # python app to make multiple proc runs
 
 set singleut  = yes  # make instantaneous plots
@@ -30,14 +30,14 @@ foreach res ($resolutions)
   endif
 
   set runs = ( \
-    tiegcm_res${res}_decsol_smax \
-    tiegcm_res${res}_decsol_smin \
+#   tiegcm_res${res}_decsol_smax \
+#   tiegcm_res${res}_decsol_smin \
     tiegcm_res${res}_junsol_smax \
-    tiegcm_res${res}_junsol_smin \
-    tiegcm_res${res}_mareqx_smax \
-    tiegcm_res${res}_mareqx_smin \
-    tiegcm_res${res}_sepeqx_smax \
-    tiegcm_res${res}_sepeqx_smin \
+#   tiegcm_res${res}_junsol_smin \
+#   tiegcm_res${res}_mareqx_smax \
+#   tiegcm_res${res}_mareqx_smin \
+#   tiegcm_res${res}_sepeqx_smax \
+#   tiegcm_res${res}_sepeqx_smin \
   )
 
   set case   = tiegcm_res${res}_seasons

benchmarks/postproc/runproc_storms

@@ -4,7 +4,7 @@
 # (instantaneous and time-dependent)
 #
 set mycwd = `pwd`
-set home = /glade/p/hao/tgcm/tiegcm_benchmarks            # base working directory
+set home = /glade/p/hao/tgcm/tiegcm2.0/benchmarks         # base working directory
 set proc = $home/postproc/tgcmproc_f90/tgcmproc/tgcmproc  # python app to make multiple proc runs
 
 set singleut  = yes  # make instantaneous plots

benchmarks/run_climatology

@@ -8,8 +8,9 @@
 # $modelroot: Model root directory (with src, scripts, etc)
 # $tgcmrun:   Path to tgcmrun executable (python)
 #
- set home      = /glade/p/hao/tgcm/tiegcm_benchmarks
- set modelroot = $home/tiegcm_trunk
+ set home      = /glade/p/hao/tgcm/tiegcm2.0/benchmarks
+ set modelroot = /glade/p/hao/tgcm/tiegcm2.0/tiegcm2.0
+ set tgcmdata  = /glade/p/hao/tgcm/data/tiegcm2.0
  set tgcmdata  = /glade/p/hao/tgcm/data/tiegcm2.0
  set tgcmrun   = $modelroot/tgcmrun/tgcmrun
  set queue     = regular # for LSF jobs

benchmarks/run_seasons

@@ -6,8 +6,8 @@
 # $modelroot: Model root directory (with src, scripts, etc)
 # $tgcmrun:   Path to tgcmrun executable (python)
 #
- set home      = /glade/p/hao/tgcm/tiegcm_benchmarks
- set modelroot = $home/tiegcm_trunk
+ set home      = /glade/p/hao/tgcm/tiegcm2.0/benchmarks
+ set modelroot = /glade/p/hao/tgcm/tiegcm2.0/tiegcm2.0
  set tgcmdata  = /glade/p/hao/tgcm/data/tiegcm2.0
  set tgcmrun   = $modelroot/tgcmrun/tgcmrun
  set queue     = regular # for LSF jobs

benchmarks/run_storms

@@ -6,8 +6,9 @@
 # $modelroot: Model root directory (with src, scripts, etc)
 # $tgcmrun:   Path to tgcmrun executable (python)
 #
- set home      = /glade/p/hao/tgcm/tiegcm_benchmarks
- set modelroot = $home/tiegcm_trunk
+ set home      = /glade/p/hao/tgcm/tiegcm2.0/benchmarks
+ set modelroot = /glade/p/hao/tgcm/tiegcm2.0/tiegcm2.0
+ set tgcmdata  = /glade/p/hao/tgcm/data/tiegcm2.0
  set tgcmdata  = /glade/p/hao/tgcm/data/tiegcm2.0
  set tgcmrun   = $modelroot/tgcmrun/tgcmrun
  set queue     = regular # for LSF jobs