updated instructions to use full paths instead of changing directorie…

…s, added steps to clone i-wrf repo to get METplus config files

docs/Users_Guide/running.rst

@@ -20,14 +20,17 @@ Load the apptainer module::
 Change directory to scratch and pull the containers from DockerHub.
 This will create a `.sif` file in the current directory::
 
-   cd ${SCRATCH}
-   apptainer pull docker://dtcenter/metplus-dev:feature_1514_madis2nc-pull_request
-   apptainer pull data-matthew-input-obs.sif oras://registry-1.docker.io/ncar/iwrf:data-matthew-input-obs
+   apptainer pull ${SCRATCH}/metplus-dev_develop.sif docker://dtcenter/metplus-dev:develop
+   apptainer pull ${SCRATCH}/data-matthew-input-obs.sif oras://registry-1.docker.io/ncar/iwrf:data-matthew-input-obs
 
 Create a directory to store the output::
 
    mkdir ${SCRATCH}/metplus_out
 
+Clone the I-WRF GitHub repository to get the configuration files::
+
+   git clone https://github.com/NCAR/i-wrf ${SCRATCH}/i-wrf
+
 Set environment variable to bind directories to container
 (note: this can also be accomplished by passing the value on the command line
 using the --bind argument)
@@ -43,23 +46,23 @@ using the --bind argument)
       * Local: From data-matthew-input-obs.sif
       * Container: /data/input/obs/metar
 * Config directory containing METplus use case configuration file
-   * Local: /glade/u/home/mccabe/i-wrf/use_cases/Hurricane_Matthew/METplus
+   * Local: ${SCRATCH}/i-wrf/use_cases/Hurricane_Matthew/METplus
    * Container: /config
 * Output directory to write output
    * Local: ${SCRATCH}/metplus_out
    * Container: /data/output
 
 ::
 
-   LOCAL_METPLUS_CONFIG_DIR=/glade/u/home/mccabe/i-wrf/use_cases/Hurricane_Matthew/METplus
+   LOCAL_METPLUS_CONFIG_DIR=${SCRATCH}/i-wrf/use_cases/Hurricane_Matthew/METplus
    LOCAL_FCST_INPUT_DIR=/glade/derecho/scratch/jaredlee/nsf_i-wrf/matthew
    LOCAL_OUTPUT_DIR=${SCRATCH}/metplus_out
 
-   export APPTAINER_BIND="data-matthew-input-obs.sif:/data/input/obs:image-src=/,${LOCAL_METPLUS_CONFIG_DIR}:/config,${LOCAL_FCST_INPUT_DIR}:/data/input/wrf,${LOCAL_OUTPUT_DIR}:/data/output"
+   export APPTAINER_BIND="${SCRATCH}/data-matthew-input-obs.sif:/data/input/obs:image-src=/,${LOCAL_METPLUS_CONFIG_DIR}:/config,${LOCAL_FCST_INPUT_DIR}:/data/input/wrf,${LOCAL_OUTPUT_DIR}:/data/output"
 
 Execute the run_metplus.py command inside the container to run the use case::
 
-   apptainer exec metplus-dev_feature_1514_madis2nc-pull_request.sif /metplus/METplus/ush/run_metplus.py /config/PointStat_matthew.conf
+   apptainer exec ${SCRATCH}/metplus-dev_develop.sif /metplus/METplus/ush/run_metplus.py /config/PointStat_matthew.conf
 
 Check that the output data was created locally::