Docs for bioc labs 01-03 and seurat DGE

NBISweden · Jan 30, 2024 · a225e47 · a225e47
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@@ -207,7 +207,7 @@ <h1 class="title"><i class="fa-brands fa-hubspot" aria-label="hubspot"></i> Dime
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-        <p class="date">16-Jan-2024</p>
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@@ -357,6 +357,7 @@ <h2 data-number="4" class="anchored" data-anchor-id="meta-dimred_pca"><span clas
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 <p>To identify which genes (Seurat) or metadata parameters (Scater/Scran) contribute the most to each PC, one can retrieve the loading matrix information. Unfortunately, this is not implemented in Scater/Scran, so you will need to compute PCA using <code>logcounts</code>.</p>
+<p>Here, we can check how the different metadata variables contributes to each PC. This can be important to look at to understand different biases you may have in your data.</p>
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 <div class="sourceCode cell-code" id="cb7"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a><span class="fu">plotExplanatoryPCs</span>(sce)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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