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NBISweden · Sep 30, 2024 · b7aa52c · b7aa52c
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-42c9c423
+f0385c9b
diff --git a/index.html b/index.html
@@ -179,6 +179,9 @@
 
 
 
+<div class="alert alert-info">
+<p>Upcoming maintenance window on the 29th of September. For information about the updates, please see <a href="./maintenence_window.html">here</a>.</p>
+</div>
 <div class="grid">
 <section id="a-central-repository-of-digital-pathology-slides-to-boost-the-development-of-artificial-intelligence" class="level3 g-col-7">
 <h3 class="anchored" data-anchor-id="a-central-repository-of-digital-pathology-slides-to-boost-the-development-of-artificial-intelligence">A central repository of digital pathology slides to boost the development of artificial intelligence</h3>
@@ -190,7 +193,6 @@ <h3 class="anchored" data-anchor-id="a-central-repository-of-digital-pathology-s
 <p><img src="./images/bp-logo.png" class="img-fluid"></p>
 </div>
 </div>
-<p>::: {.alert .alert-info} Upcoming maintenance window on the 29th of September. For information about the updates, please see <a href="./maintenence_window.html">here</a>. :::</p>
 <p>This webpage links relevant entry points of interest for different usage.</p>
 <section id="datasets" class="level3">
 <h3 class="anchored" data-anchor-id="datasets">Datasets</h3>

diff --git a/maintenence_window.html b/maintenence_window.html
@@ -189,10 +189,11 @@ <h2 class="anchored" data-anchor-id="section">2024-09-30</h2>
 <h3 class="anchored" data-anchor-id="sda-download">SDA Download</h3>
 <p>New service for accessing datasets in the BigPicture repository. Now it’s not necessary to use the work-around with sending emails and public keys but instead once you’ve gotten access to a dataset in REMS you can access it directly via sda-cli (version 0.1.2).</p>
 <p>The download service currently supports downloading both decrypted files or files encrypted with your public key directly to your environment.</p>
+<p>The visas have to be part of the access token.</p>
 </section>
 <section id="sda-cli" class="level3">
 <h3 class="anchored" data-anchor-id="sda-cli">SDA CLI</h3>
-<p>It is now possible to provide the the authentication token in the environment instead of having it in the configuration file (version 0.1.3).</p>
+<p>It is now possible to provide the the authentication token in the environment instead of having it in the configuration file.</p>
 </section>
 <section id="sda-login" class="level3">
 <h3 class="anchored" data-anchor-id="sda-login">SDA Login</h3>

diff --git a/metrics/index.html b/metrics/index.html
@@ -39,6 +39,14 @@
 <script src="../site_libs/bootstrap/bootstrap.min.js"></script>
 <link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
 <link href="../site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
+<script src="../site_libs/quarto-dashboard/quarto-dashboard.js"></script>
+<script src="../site_libs/quarto-dashboard/stickythead.js"></script>
+<script src="../site_libs/quarto-dashboard/datatables.min.js" kdttablesentinel="true"></script>
+<script src="../site_libs/quarto-dashboard/pdfmake.min.js" kdttablesentinel="true"></script>
+<script src="../site_libs/quarto-dashboard/vfs_fonts.js" kdttablesentinel="true"></script>
+<script src="../site_libs/quarto-dashboard/web-components.js" type="module"></script>
+<script src="../site_libs/quarto-dashboard/components.js"></script>
+<link href="../site_libs/quarto-dashboard/datatables.min.css" rel="stylesheet" kdttablesentinel="true">
 <script id="quarto-search-options" type="application/json">{
   "location": "navbar",
   "copy-button": false,
@@ -70,7 +78,8 @@
 
 </head>
 
-<body class="nav-fixed">
+<body class="quarto-dashboard nav-fixed fullcontent">
+
 
 <div id="quarto-search-results"></div>
   <header id="quarto-header" class="headroom fixed-top">
@@ -161,60 +170,50 @@
 <span class="menu-text">Metrics</span></a>
   </li>  
 </ul>
-          </div> <!-- /navcollapse -->
+          <div class="quarto-dashboard-links"><a class="quarto-dashboard-link" href="https://www.linkedin.com/sharing/share-offsite/?url=|url|&amp;title=Metrics%20for%20the%20central%20reporitory%20of%20digital%20pathology" title="LinkedIn"><i class="bi bi-linkedin"></i></a><a class="quarto-dashboard-link" href="https://twitter.com/intent/tweet?url=|url|&amp;text=Metrics%20for%20the%20central%20reporitory%20of%20digital%20pathology" title="Twitter"><i class="bi bi-twitter"></i></a><a class="quarto-dashboard-link" href="https://github.com/NBISweden/bp-sweden-web/" title="GitHub"><i class="bi bi-github"></i></a></div></div> <!-- /navcollapse -->
           <div class="quarto-navbar-tools">
 </div>
       </div> <!-- /container-fluid -->
     </nav>
-</header>
+<header id="quarto-dashboard-header">
+<nav class="navbar navbar-expand-md slim" data-bs-theme="dark">
+  <div class="navbar-container container-fluid">
+    <button class="navbar-toggler hidden" type="button" data-bs-toggle="collapse" data-bs-target="#dashboard-collapse" aria-controls="dashboard-collapse" aria-expanded="false" aria-label="Toggle navigation">
+      <span class="navbar-toggler-icon"></span>
+    </button>    
+
+
+    <div class="navbar-brand-container">       
+
+      <div class="navbar-title">
+        <div class="navbar-title-text"><a href="#">Metrics for the central reporitory of digital pathology</a></div>
+
+
+      </div>
+    </div>
+</div>
+</nav>
+</header></header>
 <!-- content -->
-<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
+<div id="quarto-content" class="quarto-container page-layout-custom page-navbar quarto-dashboard-content bslib-gap-spacing html-fill-container dashboard-scrolling">
 <!-- sidebar -->
 <!-- margin-sidebar -->
-    <div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
-        <nav id="TOC" role="doc-toc" class="toc-active">
-    <h2 id="toc-title">On this page</h2>
-
-  <ul>
-  <li><a href="#row" id="toc-row" class="nav-link active" data-scroll-target="#row">Row</a></li>
-  <li><a href="#row-1" id="toc-row-1" class="nav-link" data-scroll-target="#row-1">Row</a></li>
-  <li><a href="#column" id="toc-column" class="nav-link" data-scroll-target="#column">Column</a></li>
-  </ul>
-</nav>
-    </div>
 <!-- main -->
-<main class="content" id="quarto-document-content">
 
-<header id="title-block-header" class="quarto-title-block default">
-<div class="quarto-title">
-<h1 class="title">Metrics for the central reporitory of digital pathology</h1>
-</div>
-
-
-
-<div class="quarto-title-meta">
-
-
-
-
-  </div>
-
-
-
-</header>
-
-
-<section id="row" class="level2" height="50%">
-<h2 height="50%" class="anchored" data-anchor-id="row">Row</h2>
-<div class="card" title="Progress Bar">
-<div>
+<div class="bslib-grid-item html-fill-item bslib-grid" data-layout="flow" style="display: grid; grid-template-rows: minmax(3em, 50fr) minmax(3em, 50fr) minmax(3em, 50fr); grid-auto-columns: minmax(0, 1fr);">
+<div class="bslib-grid" style="display: grid; grid-template-columns: minmax(3em, 1fr);
+grid-auto-rows: minmax(0, 1fr);">
+<div class="card bslib-card html-fill-container" data-title="Progress Bar" data-bslib-card-init="" data-require-bs-caller="card()" data-full-screen="false">
+<div class="card-header"><div class="card-title">Progress Bar</div></div>
+<div class="card-body html-fill-item html-fill-container">
+<div class="html-fill-item html-fill-container">
 
     <meta charset="UTF-8">
     <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
 
-    <div class="progress-container">
-        <div class="progress-bar" id="progress-bar">0%</div>
+    <div class="progress-container html-fill-item html-fill-container">
+        <div class="progress-bar html-fill-item html-fill-container" id="progress-bar">0%</div>
     </div>
 
 <table data-quarto-postprocess="true" class="table">
@@ -249,11 +248,19 @@ <h2 height="50%" class="anchored" data-anchor-id="row">Row</h2>
 
 </div>
 </div>
-</section>
-<section id="row-1" class="level2" height="50%">
-<h2 height="50%" class="anchored" data-anchor-id="row-1">Row</h2>
-<div class="card" title="Datasets">
-<div>
+<bslib-tooltip placement="auto" bsoptions="[]" data-require-bs-version="5" data-require-bs-caller="tooltip()">
+    <template>Expand</template>
+    <span class="bslib-full-screen-enter badge rounded-pill">
+        <svg xmlns="http://www.w3.org/2000/svg" viewbox="0 0 24 24" style="height:1em;width:1em;" aria-hidden="true" role="img"><path d="M20 5C20 4.4 19.6 4 19 4H13C12.4 4 12 3.6 12 3C12 2.4 12.4 2 13 2H21C21.6 2 22 2.4 22 3V11C22 11.6 21.6 12 21 12C20.4 12 20 11.6 20 11V5ZM4 19C4 19.6 4.4 20 5 20H11C11.6 20 12 20.4 12 21C12 21.6 11.6 22 11 22H3C2.4 22 2 21.6 2 21V13C2 12.4 2.4 12 3 12C3.6 12 4 12.4 4 13V19Z"></path></svg>
+    </span>
+</bslib-tooltip><script data-bslib-card-init="">bslib.Card.initializeAllCards();</script></div>
+</div>
+<div class="bslib-grid" style="display: grid; grid-template-columns: minmax(3em, 1fr) minmax(3em, 1fr);
+grid-auto-rows: minmax(0, 1fr);">
+<div class="card bslib-card html-fill-container" data-title="Datasets" data-bslib-card-init="" data-require-bs-caller="card()" data-full-screen="false">
+<div class="card-header"><div class="card-title">Datasets</div></div>
+<div class="card-body html-fill-item html-fill-container">
+<div class="html-fill-item html-fill-container">
 <table data-quarto-postprocess="true" class="table">
 <thead>
 <tr class="header">
@@ -302,8 +309,15 @@ <h2 height="50%" class="anchored" data-anchor-id="row-1">Row</h2>
 </table>
 </div>
 </div>
-<div class="card" title="Numbers">
-<div>
+<bslib-tooltip placement="auto" bsoptions="[]" data-require-bs-version="5" data-require-bs-caller="tooltip()">
+    <template>Expand</template>
+    <span class="bslib-full-screen-enter badge rounded-pill">
+        <svg xmlns="http://www.w3.org/2000/svg" viewbox="0 0 24 24" style="height:1em;width:1em;" aria-hidden="true" role="img"><path d="M20 5C20 4.4 19.6 4 19 4H13C12.4 4 12 3.6 12 3C12 2.4 12.4 2 13 2H21C21.6 2 22 2.4 22 3V11C22 11.6 21.6 12 21 12C20.4 12 20 11.6 20 11V5ZM4 19C4 19.6 4.4 20 5 20H11C11.6 20 12 20.4 12 21C12 21.6 11.6 22 11 22H3C2.4 22 2 21.6 2 21V13C2 12.4 2.4 12 3 12C3.6 12 4 12.4 4 13V19Z"></path></svg>
+    </span>
+</bslib-tooltip><script data-bslib-card-init="">bslib.Card.initializeAllCards();</script></div><div class="card bslib-card html-fill-container" data-title="Numbers" data-bslib-card-init="" data-require-bs-caller="card()" data-full-screen="false">
+<div class="card-header"><div class="card-title">Numbers</div></div>
+<div class="card-body html-fill-item html-fill-container">
+<div class="html-fill-item html-fill-container">
 <table data-quarto-postprocess="true" class="table">
 <tbody>
 <tr class="odd">
@@ -326,34 +340,49 @@ <h2 height="50%" class="anchored" data-anchor-id="row-1">Row</h2>
 </table>
 </div>
 </div>
-</section>
-<section id="column" class="level2" width="50%">
-<h2 width="50%" class="anchored" data-anchor-id="column">Column</h2>
-<div class="card" title="Slides">
-<div>
+<bslib-tooltip placement="auto" bsoptions="[]" data-require-bs-version="5" data-require-bs-caller="tooltip()">
+    <template>Expand</template>
+    <span class="bslib-full-screen-enter badge rounded-pill">
+        <svg xmlns="http://www.w3.org/2000/svg" viewbox="0 0 24 24" style="height:1em;width:1em;" aria-hidden="true" role="img"><path d="M20 5C20 4.4 19.6 4 19 4H13C12.4 4 12 3.6 12 3C12 2.4 12.4 2 13 2H21C21.6 2 22 2.4 22 3V11C22 11.6 21.6 12 21 12C20.4 12 20 11.6 20 11V5ZM4 19C4 19.6 4.4 20 5 20H11C11.6 20 12 20.4 12 21C12 21.6 11.6 22 11 22H3C2.4 22 2 21.6 2 21V13C2 12.4 2.4 12 3 12C3.6 12 4 12.4 4 13V19Z"></path></svg>
+    </span>
+</bslib-tooltip><script data-bslib-card-init="">bslib.Card.initializeAllCards();</script></div>
+</div>
+<div class="bslib-grid" data-width="50%" style="display: grid; grid-template-columns: minmax(3em, 1fr) minmax(3em, 1fr) minmax(3em, 1fr);
+grid-auto-rows: minmax(0, 1fr);">
+<div class="card bslib-card html-fill-container" data-title="Slides" data-bslib-card-init="" data-require-bs-caller="card()" data-full-screen="false">
+<div class="card-header"><div class="card-title">Slides</div></div>
+<div class="card-body html-fill-item html-fill-container">
+<div class="html-fill-item html-fill-container">
 <table data-quarto-postprocess="true" class="table">
 <colgroup>
 <col style="width: 100%">
 </colgroup>
 <tbody>
 <tr class="odd">
-<td><div id="slidesPieChart" style="width: 600px; height: 400px;">
+<td><div id="slidesPieChart" style="width: 600px; height: 400px;" class="html-fill-item html-fill-container">
 
 </div></td>
 </tr>
 </tbody>
 </table>
 </div>
 </div>
-<div class="card" title="Datasets">
-<div>
+<bslib-tooltip placement="auto" bsoptions="[]" data-require-bs-version="5" data-require-bs-caller="tooltip()">
+    <template>Expand</template>
+    <span class="bslib-full-screen-enter badge rounded-pill">
+        <svg xmlns="http://www.w3.org/2000/svg" viewbox="0 0 24 24" style="height:1em;width:1em;" aria-hidden="true" role="img"><path d="M20 5C20 4.4 19.6 4 19 4H13C12.4 4 12 3.6 12 3C12 2.4 12.4 2 13 2H21C21.6 2 22 2.4 22 3V11C22 11.6 21.6 12 21 12C20.4 12 20 11.6 20 11V5ZM4 19C4 19.6 4.4 20 5 20H11C11.6 20 12 20.4 12 21C12 21.6 11.6 22 11 22H3C2.4 22 2 21.6 2 21V13C2 12.4 2.4 12 3 12C3.6 12 4 12.4 4 13V19Z"></path></svg>
+    </span>
+</bslib-tooltip><script data-bslib-card-init="">bslib.Card.initializeAllCards();</script></div><div class="card bslib-card html-fill-container" data-title="Datasets" data-bslib-card-init="" data-require-bs-caller="card()" data-full-screen="false">
+<div class="card-header"><div class="card-title">Datasets</div></div>
+<div class="card-body html-fill-item html-fill-container">
+<div class="html-fill-item html-fill-container">
 <table data-quarto-postprocess="true" class="table">
 <colgroup>
 <col style="width: 100%">
 </colgroup>
 <tbody>
 <tr class="odd">
-<td><div id="datasetPieChart" style="width: 600px; height: 400px;">
+<td><div id="datasetPieChart" style="width: 600px; height: 400px;" class="html-fill-item html-fill-container">
 
 </div></td>
 </tr>
@@ -407,7 +436,12 @@ <h2 width="50%" class="anchored" data-anchor-id="column">Column</h2>
 
 </div>
 </div>
-<style>
+<bslib-tooltip placement="auto" bsoptions="[]" data-require-bs-version="5" data-require-bs-caller="tooltip()">
+    <template>Expand</template>
+    <span class="bslib-full-screen-enter badge rounded-pill">
+        <svg xmlns="http://www.w3.org/2000/svg" viewbox="0 0 24 24" style="height:1em;width:1em;" aria-hidden="true" role="img"><path d="M20 5C20 4.4 19.6 4 19 4H13C12.4 4 12 3.6 12 3C12 2.4 12.4 2 13 2H21C21.6 2 22 2.4 22 3V11C22 11.6 21.6 12 21 12C20.4 12 20 11.6 20 11V5ZM4 19C4 19.6 4.4 20 5 20H11C11.6 20 12 20.4 12 21C12 21.6 11.6 22 11 22H3C2.4 22 2 21.6 2 21V13C2 12.4 2.4 12 3 12C3.6 12 4 12.4 4 13V19Z"></path></svg>
+    </span>
+</bslib-tooltip><script data-bslib-card-init="">bslib.Card.initializeAllCards();</script></div><style>
   .progress-container {
             width: 100%;
             background-color: #f3f3f3;
@@ -455,12 +489,13 @@ <h2 width="50%" class="anchored" data-anchor-id="column">Column</h2>
   li {
     margin-bottom: 10px;
   }
-</style>
+</style><div id="3ade8a4a-fb1d-4a6c-8409-ac45482d5fc9" class="hidden">
 
+</div>
+</div>
+</div>
 
-</section>
 
-</main> <!-- /main -->
 <script id="quarto-html-after-body" type="application/javascript">
 window.document.addEventListener("DOMContentLoaded", function (event) {
   const toggleBodyColorMode = (bsSheetEl) => {
@@ -850,6 +885,14 @@ <h2 width="50%" class="anchored" data-anchor-id="column">Column</h2>
 </script>
 </div> <!-- /content -->
 
+<script type="application/javascript">
+window.document.addEventListener("DOMContentLoaded", function (_event) {
+  if (window.bslib.Card) {
+    window.bslib.Card.initializeAllCards();
+  }
+}); 
+</script>
+
 
 
 

diff --git a/robots.txt b/robots.txt
@@ -0,0 +1 @@
+Sitemap: https://bp.nbis.se/sitemap.xml