Added a bunch of top-level scripts

_template_driver_script.sh

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+cd /groups/mousebrainmicro/mousebrainmicro/scripts/freezing
+out=freeze-2021-04-10.out.txt
+bsub -P mouselight -n 8 -oo $out -eo $out /misc/local/matlab-2019a/bin/matlab -nodisplay -batch "modpath; freeze_2021_04_10"

freeze_2020_09_15.m

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+sample_date = '2020-09-15' ;
+mj2_output_folder_path = sprintf('/nrs/mouselight/SAMPLES/TO_NEARLINE/%s', sample_date) ;
+tif_input_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/data/%s', sample_date) ;
+compression_ratio = 10 ;
+do_run_on_cluster = true ;
+maximum_running_slot_count = 500 ;
+
+freeze_sample
+

freeze_2020_11_26.m

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+sample_date = '2020-11-26' ;
+mj2_output_folder_path = sprintf('/nrs/mouselight/SAMPLES/TO_NEARLINE/%s', sample_date) ;
+tif_input_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/data/%s', sample_date) ;
+compression_ratio = 10 ;
+do_run_on_cluster = true ;
+maximum_running_slot_count = 500 ;
+
+freeze_sample
+

freeze_2020_12_31.m

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+sample_date = '2020-09-15' ;
+mj2_output_folder_path = sprintf('/nrs/mouselight/SAMPLES/TO_NEARLINE/%s', sample_date) ;
+tif_input_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/data/%s', sample_date) ;
+compression_ratio = 10 ;
+do_run_on_cluster = true ;
+maximum_running_slot_count = 500 ;
+
+freeze_sample
+

freeze_2021_02_05.m

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+sample_date = '2021-02-05' ;
+mj2_output_folder_path = sprintf('/nrs/mouselight/SAMPLES/TO_NEARLINE/RAW_archive/%s', sample_date) ;
+tif_input_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/data/to_compress/%s', sample_date) ;
+compression_ratio = 10 ;
+do_run_on_cluster = true ;
+maximum_running_slot_count = 500 ;
+
+freeze_sample
+

freeze_2021_03_17.m

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+sample_date = '2021-03-17' ;
+mj2_output_folder_path = sprintf('/nrs/mouselight/SAMPLES/TO_NEARLINE_TEMP/RAW_archive/%s', sample_date) ;
+tif_input_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/data/%s', sample_date) ;
+compression_ratio = 10 ;
+do_run_on_cluster = true ;
+maximum_running_slot_count = 500 ;
+
+freeze_sample
+

freeze_2021_04_10.m

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+sample_date = '2021-04-10' ;
+mj2_output_folder_path = sprintf('/nrs/mouselight/SAMPLES/TO_NEARLINE/RAW_archive/%s', sample_date) ;
+tif_input_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/data/to_compress/%s', sample_date) ;
+compression_ratio = 10 ;
+do_run_on_cluster = true ;
+maximum_running_slot_count = 500 ;
+
+freeze_sample
+

freeze_2021_05_22.m

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+sample_date = '2021-05-22' ;
+mj2_output_folder_path = sprintf('/nrs/mouselight/SAMPLES/TO_NEARLINE_TEMP/RAW_archive/%s', sample_date) ;
+tif_input_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/data/%s', sample_date) ;
+compression_ratio = 10 ;
+do_run_on_cluster = true ;
+maximum_running_slot_count = 500 ;
+
+freeze_sample
+

freeze_2021_06_06.m

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+sample_date = '2021-06-06' ;
+mj2_output_folder_path = sprintf('/nrs/mouselight/SAMPLES/TO_NEARLINE/RAW_archive/%s', sample_date) ;
+tif_input_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/data/to_compress/%s', sample_date) ;
+compression_ratio = 10 ;
+do_run_on_cluster = true ;
+maximum_running_slot_count = 500 ;
+
+freeze_sample
+

freeze_2021_08_17.m

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+sample_date = '2021-08-17' ;
+mj2_output_folder_path = sprintf('/nrs/mouselight/SAMPLES/TO_NEARLINE_TEMP/RAW_archive/%s', sample_date) ;
+tif_input_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/data/aborted-acquisitions/%s', sample_date) ;
+compression_ratio = 10 ;
+do_run_on_cluster = true ;
+maximum_running_slot_count = 500 ;
+
+freeze_sample
+

freeze_nrs_test_tf.m

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+sample_date = '2020-11-30-selected' ;
+mj2_output_folder_path = sprintf('/nrs/mouselight/Temp/frozen-test/%s', sample_date) ;
+tif_input_folder_path = sprintf('/groups/mousebrainmicro/mousebrainmicro/data/acquisition/scope1-tests/%s', sample_date) ;
+compression_ratio = 10 ;
+do_run_on_cluster = true ;
+maximum_running_slot_count = 500 ;
+
+freeze_sample
+