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scripts		scripts
README.md		README.md
biodiversity_next.pdf		biodiversity_next.pdf
example.csv		example.csv

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biodiversity_next

Set polygon: https://www.gbif.org/occurrence/search?country=US&has_coordinate=true&has_geospatial_issue=false&taxon_key=1&advanced=1&geometry=POLYGON((-120.45565%2037.35309,-120.36587%2037.35309,-120.36587%2037.44063,-120.45565%2037.44063,-120.45565%2037.35309))

Download records: 0023214-190918142434337.csv

Install physcraper python package: https://github.com/McTavishLab/physcraper/blob/master/INSTALL

Get OpenTree ids for records:

python scripts/gbif_tree.py gbif_download.csv

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Python 100.0%