Ribbon/SplitThreader 2.1.0

What's Changed

• Change HG008 example bams to GRCh38 by @MariaNattestad in #101
• Fix permalink issue by @robertaboukhalil in #103
• Fix typo in function name by @robertaboukhalil in #104
• Add more useful warnings and errors for bedpe by @MariaNattestad in #110
• Download & mount BAIs in one shot instead of 1MB at a time by @robertaboukhalil in #111
• Fix undeclared variable by @MariaNattestad in #112
• Fix auto-zoom on variant selected, and various improvements by @MariaNattestad in #114
• Fix links to UCSC genome browser. by @MariaNattestad in #115
• Update example sessions with various HG008 datasets by @MariaNattestad in #116
• Enable jumping to Ribbon from a variant in SplitThreader by @MariaNattestad in #117
• Set default alignment color to orientation by @MariaNattestad in #118
• Major documentation update. by @MariaNattestad in #119

Full Changelog: 2.0.0...2.1.0

The ribbon_splitthreader.zip file below contains a build that should work offline -- see README for details.

Ribbon 2.0.0

Major update including the addition of SplitThreader.

See full updates here:
https://github.com/MariaNattestad/Ribbon/blob/main/docs/release_notes_v2.md

Ribbon 1.2.1

Fix JQuery bug in the panels that prevented them from being collapsed and uncollapsed.

Ribbon 1.2

• Remove dependence on PHP to make Ribbon work with only a front-end.
• Update build process to use npm.
• Update libraries for reading .bam files.
• Move permalink storage.

Ribbon 1.1

Updates:

• Using WebAssembly to read local bam files -- from @robertaboukhalil
• Updated message system to show multiple warnings, instructions, etc. and let the user close them.
• Allow selection of a region from a feature such as genes, repeats, etc. by clicking in the feature table.
• Updated dependencies.

If you wish to avoid installing NPM to get the dependencies, use the release ribbon.zip below.

Ribbon 1.0

Ribbon version as of the BioRxiv preprint.