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FIXED R libraries issue for fsl-fix
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rcruces committed Dec 28, 2023
1 parent a14c085 commit 7289197
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Showing 5 changed files with 8 additions and 5 deletions.
5 changes: 3 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -341,8 +341,9 @@ RUN set -uex; \
apt install -y software-properties-common apt-transport-https; \
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9; \
add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/'; \
apt update; \
apt install -y r-base libblas-dev liblapack-dev gfortran g++ libgl1-mesa-glx; \
apt-get update; \
apt-get install -y r-base libblas-dev liblapack-dev gfortran g++ libgl1-mesa-glx; \
apt-get install -y r-base-dev; \
rm -rf /var/lib/apt/lists/*;

COPY ./R_config/* /opt/
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Binary file removed R_config/ROCR_1.0-11.tar.gz
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Binary file removed R_config/e1071_1.7-13.tar.gz
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8 changes: 5 additions & 3 deletions R_config/install_R_env.sh
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Expand Up @@ -14,9 +14,6 @@ R -e 'install.packages("/opt/randomForest_4.6-14.tar.gz", repos = NULL, type = "
R -e 'install.packages("/opt/MASS_7.3-54.tar.gz", repos = NULL, type = "source")'
R -e 'install.packages("/opt/class_7.3-19.tar.gz", repos = NULL, type = "source")'
R -e 'install.packages("/opt/kernlab_0.9-32.tar.gz", repos = NULL, type = "source")'
R -e 'install.packages("/opt/ROCR_1.0-11.tar.gz", repos = NULL, type = "source")'
R -e 'install.packages("/opt/party_1.3-13.tar.gz", repos = NULL, type = "source")'
R -e 'install.packages("/opt/e1071_1.7-13.tar.gz", repos = NULL, type = "source")'

R -e "install.packages('versions')"
R -e "install.packages('Matrix', version = '1.2-18')"
Expand All @@ -29,3 +26,8 @@ R -e "install.packages('mvtnorm', version = '1.1-1')"
R -e "install.packages('coin', version = '1.3-1')"
R -e "install.packages('pkgconfig', version = '2.0.3')"
R -e "install.packages('libcoin')"

# Packages for fsl-fix
R -e "install.packages('ROCR', version = '1.0-11')"
R -e "install.packages('party', version = '1.3-13')"
R -e "install.packages('e1071', version = '1.7-4')"
Binary file removed R_config/party_1.3-13.tar.gz
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